Gene : Seita.9G307400 S. italica v2.2
Defline:  (1 of 1) PTHR35695:SF1 - GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, CHLOROPLASTIC Genomic Order:  3074
Name:  ? Seita.9G307400 Secondary Identifier:  ? PAC:32688122
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1319 Setaria italica pathologic  
Sitalica PWY4FS-7 Setaria italica pathologic  
Sitalica PWY-7411 Setaria italica pathologic  
Sitalica TRIGLSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G307400 0.5kb upstream 0.5kb upstream 7194 true scaffold_9: 35482573-35489766 Setaria italica
Seita.9G307400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 35489267-35489766 Setaria italica
Seita.9G307400 0.5kb downstream 0.5kb downstream 7194 true scaffold_9: 35482073-35489266 Setaria italica
Seita.9G307400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 35482073-35482572 Setaria italica
Seita.9G307400 1.0kb upstream 1.0kb upstream 7694 true scaffold_9: 35482573-35490266 Setaria italica
Seita.9G307400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 35489267-35490266 Setaria italica
Seita.9G307400 1.0kb downstream 1.0kb downstream 7694 true scaffold_9: 35481573-35489266 Setaria italica
Seita.9G307400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 35481573-35482572 Setaria italica
Seita.9G307400 2.0kb upstream 2.0kb upstream 8694 true scaffold_9: 35482573-35491266 Setaria italica
Seita.9G307400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 35489267-35491266 Setaria italica
Seita.9G307400 2.0kb downstream 2.0kb downstream 8694 true scaffold_9: 35480573-35489266 Setaria italica
Seita.9G307400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 35480573-35482572 Setaria italica
Seita.9G307400 5.0kb upstream 5.0kb upstream 11694 true scaffold_9: 35482573-35494266 Setaria italica
Seita.9G307400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 35489267-35494266 Setaria italica
Seita.9G307400 5.0kb downstream 5.0kb downstream 11694 true scaffold_9: 35477573-35489266 Setaria italica
Seita.9G307400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 35477573-35482572 Setaria italica
Seita.9G307400 10.0kb upstream 10.0kb upstream 16694 true scaffold_9: 35482573-35499266 Setaria italica
Seita.9G307400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 35489267-35499266 Setaria italica
Seita.9G307400 10.0kb downstream 10.0kb downstream 16694 true scaffold_9: 35472573-35489266 Setaria italica
Seita.9G307400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 35472573-35482572 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176479 5267 Panicoideae View MSA
124583790 5269 Grass View MSA
122046647 5273 Angiosperm View MSA
121346869 5274 Embryophyte View MSA
123424445 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.209        
cufflinks 6.744        
cufflinks 25.232     High High
cufflinks 21.902     High High
cufflinks 20.603     High  
cufflinks 6.684        
cufflinks 20.739     High  
cufflinks 20.582     High  
cufflinks 22.621     High High
cufflinks 5.415       Low
cufflinks 6.506        
cufflinks 5.141       Low
cufflinks 4.617       Low
cufflinks 19.428     High  
cufflinks 4.176       Low
cufflinks 23.245     High High
cufflinks 5.215       Low
cufflinks 14.295     High  
cufflinks 15.897     High  
cufflinks 4.689       Low

0 Strain