Gene : Seita.9G307800 S. italica v2.2
Defline:  (1 of 2) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Genomic Order:  3078
Name:  ? Seita.9G307800 Secondary Identifier:  ? PAC:32688263
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G307800 0.5kb upstream 0.5kb upstream 6440 true scaffold_9: 35502939-35509378 Setaria italica
Seita.9G307800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 35508879-35509378 Setaria italica
Seita.9G307800 0.5kb downstream 0.5kb downstream 6440 true scaffold_9: 35502439-35508878 Setaria italica
Seita.9G307800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 35502439-35502938 Setaria italica
Seita.9G307800 1.0kb upstream 1.0kb upstream 6940 true scaffold_9: 35502939-35509878 Setaria italica
Seita.9G307800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 35508879-35509878 Setaria italica
Seita.9G307800 1.0kb downstream 1.0kb downstream 6940 true scaffold_9: 35501939-35508878 Setaria italica
Seita.9G307800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 35501939-35502938 Setaria italica
Seita.9G307800 2.0kb upstream 2.0kb upstream 7940 true scaffold_9: 35502939-35510878 Setaria italica
Seita.9G307800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 35508879-35510878 Setaria italica
Seita.9G307800 2.0kb downstream 2.0kb downstream 7940 true scaffold_9: 35500939-35508878 Setaria italica
Seita.9G307800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 35500939-35502938 Setaria italica
Seita.9G307800 5.0kb upstream 5.0kb upstream 10940 true scaffold_9: 35502939-35513878 Setaria italica
Seita.9G307800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 35508879-35513878 Setaria italica
Seita.9G307800 5.0kb downstream 5.0kb downstream 10940 true scaffold_9: 35497939-35508878 Setaria italica
Seita.9G307800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 35497939-35502938 Setaria italica
Seita.9G307800 10.0kb upstream 10.0kb upstream 15940 true scaffold_9: 35502939-35518878 Setaria italica
Seita.9G307800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 35508879-35518878 Setaria italica
Seita.9G307800 10.0kb downstream 10.0kb downstream 15940 true scaffold_9: 35492939-35508878 Setaria italica
Seita.9G307800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 35492939-35502938 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182605 5267 Panicoideae View MSA
124577969 5269 Grass View MSA
122042889 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121310039 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.104        
cufflinks 3.939        
cufflinks 1.226       Low
cufflinks 1.871       Low
cufflinks 2.974        
cufflinks 4.021        
cufflinks 7.422       High
cufflinks 2.046       Low
cufflinks 6.513       High
cufflinks 3.658        
cufflinks 4.424        
cufflinks 4.32        
cufflinks 4.048        
cufflinks 6.251        
cufflinks 7.574       High
cufflinks 3.939        
cufflinks 3.61        
cufflinks 7.019       High
cufflinks 2.731        
cufflinks 4.537        

0 Strain