Gene : Seita.9G311100 S. italica v2.2
Defline:  (1 of 20) PF04640 - PLATZ transcription factor (PLATZ) Genomic Order:  3111
Name:  ? Seita.9G311100 Secondary Identifier:  ? PAC:32690144
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G311100 0.5kb upstream 0.5kb upstream 3391 true scaffold_9: 35921805-35925195 Setaria italica
Seita.9G311100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 35921805-35922304 Setaria italica
Seita.9G311100 0.5kb downstream 0.5kb downstream 3391 true scaffold_9: 35922305-35925695 Setaria italica
Seita.9G311100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 35925196-35925695 Setaria italica
Seita.9G311100 1.0kb upstream 1.0kb upstream 3891 true scaffold_9: 35921305-35925195 Setaria italica
Seita.9G311100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 35921305-35922304 Setaria italica
Seita.9G311100 1.0kb downstream 1.0kb downstream 3891 true scaffold_9: 35922305-35926195 Setaria italica
Seita.9G311100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 35925196-35926195 Setaria italica
Seita.9G311100 2.0kb upstream 2.0kb upstream 4891 true scaffold_9: 35920305-35925195 Setaria italica
Seita.9G311100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 35920305-35922304 Setaria italica
Seita.9G311100 2.0kb downstream 2.0kb downstream 4891 true scaffold_9: 35922305-35927195 Setaria italica
Seita.9G311100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 35925196-35927195 Setaria italica
Seita.9G311100 5.0kb upstream 5.0kb upstream 7891 true scaffold_9: 35917305-35925195 Setaria italica
Seita.9G311100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 35917305-35922304 Setaria italica
Seita.9G311100 5.0kb downstream 5.0kb downstream 7891 true scaffold_9: 35922305-35930195 Setaria italica
Seita.9G311100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 35925196-35930195 Setaria italica
Seita.9G311100 10.0kb upstream 10.0kb upstream 12891 true scaffold_9: 35912305-35925195 Setaria italica
Seita.9G311100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 35912305-35922304 Setaria italica
Seita.9G311100 10.0kb downstream 10.0kb downstream 12891 true scaffold_9: 35922305-35935195 Setaria italica
Seita.9G311100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 35925196-35935195 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992856 5273 Angiosperm View MSA
122195770 5267 Panicoideae View MSA
124572616 5269 Grass View MSA
121263182 5274 Embryophyte View MSA
123301768 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.907     High  
cufflinks 6.359       Low
cufflinks 11.667     High  
cufflinks 12.15     High  
cufflinks 20.661     High  
cufflinks 8.565       Low
cufflinks 35.095     High High
cufflinks 12.906        
cufflinks 23.005     High  
cufflinks 28.257     High High
cufflinks 15.536     High  
cufflinks 19.353     High  
cufflinks 17.29     High  
cufflinks 27.5     High High
cufflinks 20.664     High  
cufflinks 15.252     High  
cufflinks 17.178     High  
cufflinks 16.439     High  
cufflinks 12.338     High  
cufflinks 17.401     High  

0 Strain