Gene : Seita.9G309700 S. italica v2.2
Defline:  (1 of 2) PTHR31906:SF5 - PLASTID-LIPID-ASSOCIATED PROTEIN 3, CHLOROPLASTIC-RELATED Genomic Order:  3097
Name:  ? Seita.9G309700 Secondary Identifier:  ? PAC:32689319
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G309700 0.5kb upstream 0.5kb upstream 3051 true scaffold_9: 35754429-35757479 Setaria italica
Seita.9G309700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 35756980-35757479 Setaria italica
Seita.9G309700 0.5kb downstream 0.5kb downstream 3051 true scaffold_9: 35753929-35756979 Setaria italica
Seita.9G309700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 35753929-35754428 Setaria italica
Seita.9G309700 1.0kb upstream 1.0kb upstream 3551 true scaffold_9: 35754429-35757979 Setaria italica
Seita.9G309700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 35756980-35757979 Setaria italica
Seita.9G309700 1.0kb downstream 1.0kb downstream 3551 true scaffold_9: 35753429-35756979 Setaria italica
Seita.9G309700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 35753429-35754428 Setaria italica
Seita.9G309700 2.0kb upstream 2.0kb upstream 4551 true scaffold_9: 35754429-35758979 Setaria italica
Seita.9G309700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 35756980-35758979 Setaria italica
Seita.9G309700 2.0kb downstream 2.0kb downstream 4551 true scaffold_9: 35752429-35756979 Setaria italica
Seita.9G309700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 35752429-35754428 Setaria italica
Seita.9G309700 5.0kb upstream 5.0kb upstream 7551 true scaffold_9: 35754429-35761979 Setaria italica
Seita.9G309700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 35756980-35761979 Setaria italica
Seita.9G309700 5.0kb downstream 5.0kb downstream 7551 true scaffold_9: 35749429-35756979 Setaria italica
Seita.9G309700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 35749429-35754428 Setaria italica
Seita.9G309700 10.0kb upstream 10.0kb upstream 12551 true scaffold_9: 35754429-35766979 Setaria italica
Seita.9G309700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 35756980-35766979 Setaria italica
Seita.9G309700 10.0kb downstream 10.0kb downstream 12551 true scaffold_9: 35744429-35756979 Setaria italica
Seita.9G309700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 35744429-35754428 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183721 5267 Panicoideae View MSA
124571593 5269 Grass View MSA
122048215 5273 Angiosperm View MSA
121346450 5274 Embryophyte View MSA
123427802 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.903       Low
cufflinks 9.959        
cufflinks 73.023     High High
cufflinks 68.712     High High
cufflinks 52.627     High High
cufflinks 10.735        
cufflinks 19.87     High  
cufflinks 52.22     High High
cufflinks 24.921     High  
cufflinks 8.449        
cufflinks 5.686       Low
cufflinks 6.562        
cufflinks 7.678        
cufflinks 62.664     High High
cufflinks 7.362        
cufflinks 17.574     High  
cufflinks 6.432        
cufflinks 8.492        
cufflinks 63.252     High High
cufflinks 6.723        

0 Strain