Gene : Seita.9G312600 S. italica v2.2
Defline:  (1 of 2) PTHR15141:SF52 - BAH AND TFIIS DOMAIN-CONTAINING PROTEIN Genomic Order:  3126
Name:  ? Seita.9G312600 Secondary Identifier:  ? PAC:32690608
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G312600 0.5kb upstream 0.5kb upstream 7375 true scaffold_9: 36050329-36057703 Setaria italica
Seita.9G312600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 36050329-36050828 Setaria italica
Seita.9G312600 0.5kb downstream 0.5kb downstream 7375 true scaffold_9: 36050829-36058203 Setaria italica
Seita.9G312600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 36057704-36058203 Setaria italica
Seita.9G312600 1.0kb upstream 1.0kb upstream 7875 true scaffold_9: 36049829-36057703 Setaria italica
Seita.9G312600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 36049829-36050828 Setaria italica
Seita.9G312600 1.0kb downstream 1.0kb downstream 7875 true scaffold_9: 36050829-36058703 Setaria italica
Seita.9G312600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 36057704-36058703 Setaria italica
Seita.9G312600 2.0kb upstream 2.0kb upstream 8875 true scaffold_9: 36048829-36057703 Setaria italica
Seita.9G312600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 36048829-36050828 Setaria italica
Seita.9G312600 2.0kb downstream 2.0kb downstream 8875 true scaffold_9: 36050829-36059703 Setaria italica
Seita.9G312600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 36057704-36059703 Setaria italica
Seita.9G312600 5.0kb upstream 5.0kb upstream 11875 true scaffold_9: 36045829-36057703 Setaria italica
Seita.9G312600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 36045829-36050828 Setaria italica
Seita.9G312600 5.0kb downstream 5.0kb downstream 11875 true scaffold_9: 36050829-36062703 Setaria italica
Seita.9G312600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 36057704-36062703 Setaria italica
Seita.9G312600 10.0kb upstream 10.0kb upstream 16875 true scaffold_9: 36040829-36057703 Setaria italica
Seita.9G312600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 36040829-36050828 Setaria italica
Seita.9G312600 10.0kb downstream 10.0kb downstream 16875 true scaffold_9: 36050829-36067703 Setaria italica
Seita.9G312600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 36057704-36067703 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064116 5267 Panicoideae View MSA
124363526 5269 Grass View MSA
122044388 5273 Angiosperm View MSA
121350650 5274 Embryophyte View MSA
123381837 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.164     High  
cufflinks 26.575     High  
cufflinks 30.601     High  
cufflinks 21.912     High  
cufflinks 22.766     High  
cufflinks 26.407     High  
cufflinks 28.452     High  
cufflinks 15.989     High Low
cufflinks 21.559     High  
cufflinks 13.694       Low
cufflinks 24.019     High  
cufflinks 24.547     High  
cufflinks 24.718     High  
cufflinks 27.67     High  
cufflinks 28.55     High  
cufflinks 31.775     High High
cufflinks 20.498     High  
cufflinks 37.608     High High
cufflinks 27.623     High  
cufflinks 22.579     High  

0 Strain