Gene : Seita.9G323500 S. italica v2.2
Defline:  (1 of 1) KOG2981 - Protein involved in autophagocytosis during starvation Genomic Order:  3235
Name:  ? Seita.9G323500 Secondary Identifier:  ? PAC:32687249
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G323500 0.5kb upstream 0.5kb upstream 5159 true scaffold_9: 37272387-37277545 Setaria italica
Seita.9G323500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 37272387-37272886 Setaria italica
Seita.9G323500 0.5kb downstream 0.5kb downstream 5159 true scaffold_9: 37272887-37278045 Setaria italica
Seita.9G323500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 37277546-37278045 Setaria italica
Seita.9G323500 1.0kb upstream 1.0kb upstream 5659 true scaffold_9: 37271887-37277545 Setaria italica
Seita.9G323500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 37271887-37272886 Setaria italica
Seita.9G323500 1.0kb downstream 1.0kb downstream 5659 true scaffold_9: 37272887-37278545 Setaria italica
Seita.9G323500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 37277546-37278545 Setaria italica
Seita.9G323500 2.0kb upstream 2.0kb upstream 6659 true scaffold_9: 37270887-37277545 Setaria italica
Seita.9G323500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 37270887-37272886 Setaria italica
Seita.9G323500 2.0kb downstream 2.0kb downstream 6659 true scaffold_9: 37272887-37279545 Setaria italica
Seita.9G323500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 37277546-37279545 Setaria italica
Seita.9G323500 5.0kb upstream 5.0kb upstream 9659 true scaffold_9: 37267887-37277545 Setaria italica
Seita.9G323500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 37267887-37272886 Setaria italica
Seita.9G323500 5.0kb downstream 5.0kb downstream 9659 true scaffold_9: 37272887-37282545 Setaria italica
Seita.9G323500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 37277546-37282545 Setaria italica
Seita.9G323500 10.0kb upstream 10.0kb upstream 14659 true scaffold_9: 37262887-37277545 Setaria italica
Seita.9G323500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 37262887-37272886 Setaria italica
Seita.9G323500 10.0kb downstream 10.0kb downstream 14659 true scaffold_9: 37272887-37287545 Setaria italica
Seita.9G323500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 37277546-37287545 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188878 5267 Panicoideae View MSA
124586236 5269 Grass View MSA
122041877 5273 Angiosperm View MSA
121349462 5274 Embryophyte View MSA
123426307 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.313        
cufflinks 12.174        
cufflinks 10.874     High  
cufflinks 12.369     High  
cufflinks 10.139        
cufflinks 11.593        
cufflinks 10.156        
cufflinks 11.053        
cufflinks 9.32       Low
cufflinks 14.889        
cufflinks 14.531     High  
cufflinks 18.554     High High
cufflinks 24.732     High High
cufflinks 10.438        
cufflinks 23.556     High High
cufflinks 9.363       Low
cufflinks 15.267     High  
cufflinks 16.191     High  
cufflinks 11.999     High  
cufflinks 15.395     High  

0 Strain