Gene : Seita.9G248900 S. italica v2.2
Defline:  (1 of 2) PTHR23419 - DIVALENT CATION TOLERANCE CUTA-RELATED Genomic Order:  2489
Name:  ? Seita.9G248900 Secondary Identifier:  ? PAC:32689848
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G248900 0.5kb upstream 0.5kb upstream 3549 true scaffold_9: 19655341-19658889 Setaria italica
Seita.9G248900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 19655341-19655840 Setaria italica
Seita.9G248900 0.5kb downstream 0.5kb downstream 3549 true scaffold_9: 19655841-19659389 Setaria italica
Seita.9G248900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 19658890-19659389 Setaria italica
Seita.9G248900 1.0kb upstream 1.0kb upstream 4049 true scaffold_9: 19654841-19658889 Setaria italica
Seita.9G248900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 19654841-19655840 Setaria italica
Seita.9G248900 1.0kb downstream 1.0kb downstream 4049 true scaffold_9: 19655841-19659889 Setaria italica
Seita.9G248900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 19658890-19659889 Setaria italica
Seita.9G248900 2.0kb upstream 2.0kb upstream 5049 true scaffold_9: 19653841-19658889 Setaria italica
Seita.9G248900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 19653841-19655840 Setaria italica
Seita.9G248900 2.0kb downstream 2.0kb downstream 5049 true scaffold_9: 19655841-19660889 Setaria italica
Seita.9G248900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 19658890-19660889 Setaria italica
Seita.9G248900 5.0kb upstream 5.0kb upstream 8049 true scaffold_9: 19650841-19658889 Setaria italica
Seita.9G248900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 19650841-19655840 Setaria italica
Seita.9G248900 5.0kb downstream 5.0kb downstream 8049 true scaffold_9: 19655841-19663889 Setaria italica
Seita.9G248900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 19658890-19663889 Setaria italica
Seita.9G248900 10.0kb upstream 10.0kb upstream 13049 true scaffold_9: 19645841-19658889 Setaria italica
Seita.9G248900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 19645841-19655840 Setaria italica
Seita.9G248900 10.0kb downstream 10.0kb downstream 13049 true scaffold_9: 19655841-19668889 Setaria italica
Seita.9G248900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 19658890-19668889 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064959 5267 Panicoideae View MSA
124590291 5269 Grass View MSA
122046469 5273 Angiosperm View MSA
121350937 5274 Embryophyte View MSA
123425667 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.601        
cufflinks 2.014        
cufflinks 0.743       Low
cufflinks 0.915       Low
cufflinks 1.077        
cufflinks 1.303        
cufflinks 1.107        
cufflinks 1.894        
cufflinks 1.297        
cufflinks 6.921       High
cufflinks 2.011        
cufflinks 1.612        
cufflinks 1.743        
cufflinks 1.363        
cufflinks 1.641        
cufflinks 1.84        
cufflinks 1.431        
cufflinks 3.255       High
cufflinks 1.879        
cufflinks 1.158        

0 Strain