Gene : Seita.9G248200 S. italica v2.2
Defline:  (1 of 3) 1.13.11.53 - Acireductone dioxygenase (Ni(2+)-requiring) / E-2 Genomic Order:  2482
Name:  ? Seita.9G248200 Secondary Identifier:  ? PAC:32691693
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4361 Setaria italica pathologic  
Sitalica PWY-5389 Setaria italica pathologic  
Sitalica PWY-7270 Setaria italica pathologic  
Sitalica PWY-7528 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G248200 0.5kb upstream 0.5kb upstream 5647 true scaffold_9: 19506614-19512260 Setaria italica
Seita.9G248200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 19511761-19512260 Setaria italica
Seita.9G248200 0.5kb downstream 0.5kb downstream 5647 true scaffold_9: 19506114-19511760 Setaria italica
Seita.9G248200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 19506114-19506613 Setaria italica
Seita.9G248200 1.0kb upstream 1.0kb upstream 6147 true scaffold_9: 19506614-19512760 Setaria italica
Seita.9G248200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 19511761-19512760 Setaria italica
Seita.9G248200 1.0kb downstream 1.0kb downstream 6147 true scaffold_9: 19505614-19511760 Setaria italica
Seita.9G248200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 19505614-19506613 Setaria italica
Seita.9G248200 2.0kb upstream 2.0kb upstream 7147 true scaffold_9: 19506614-19513760 Setaria italica
Seita.9G248200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 19511761-19513760 Setaria italica
Seita.9G248200 2.0kb downstream 2.0kb downstream 7147 true scaffold_9: 19504614-19511760 Setaria italica
Seita.9G248200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 19504614-19506613 Setaria italica
Seita.9G248200 5.0kb upstream 5.0kb upstream 10147 true scaffold_9: 19506614-19516760 Setaria italica
Seita.9G248200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 19511761-19516760 Setaria italica
Seita.9G248200 5.0kb downstream 5.0kb downstream 10147 true scaffold_9: 19501614-19511760 Setaria italica
Seita.9G248200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 19501614-19506613 Setaria italica
Seita.9G248200 10.0kb upstream 10.0kb upstream 15147 true scaffold_9: 19506614-19521760 Setaria italica
Seita.9G248200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 19511761-19521760 Setaria italica
Seita.9G248200 10.0kb downstream 10.0kb downstream 15147 true scaffold_9: 19496614-19511760 Setaria italica
Seita.9G248200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 19496614-19506613 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179204 5267 Panicoideae View MSA
124465520 5269 Grass View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.115     High  
cufflinks 37.935     High  
cufflinks 50.606     High High
cufflinks 43.856     High  
cufflinks 30.572     High  
cufflinks 31.656     High  
cufflinks 32.034     High  
cufflinks 26.571     High Low
cufflinks 30.388     High  
cufflinks 25.279     High Low
cufflinks 24.7     High Low
cufflinks 43.957     High  
cufflinks 36.81     High  
cufflinks 76.323     High High
cufflinks 32.93     High  
cufflinks 26.384     High Low
cufflinks 40.471     High  
cufflinks 30.24     High  
cufflinks 49.08     High High
cufflinks 36.945     High  

0 Strain