Gene : Seita.9G256200 S. italica v2.2
Defline:  (1 of 1) PTHR12897 - COLON CANCER-ASSOCIATED PROTEIN MIC1 Genomic Order:  2562
Name:  ? Seita.9G256200 Secondary Identifier:  ? PAC:32692685
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G256200 0.5kb upstream 0.5kb upstream 5920 true scaffold_9: 20754650-20760569 Setaria italica
Seita.9G256200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 20754650-20755149 Setaria italica
Seita.9G256200 0.5kb downstream 0.5kb downstream 5920 true scaffold_9: 20755150-20761069 Setaria italica
Seita.9G256200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 20760570-20761069 Setaria italica
Seita.9G256200 1.0kb upstream 1.0kb upstream 6420 true scaffold_9: 20754150-20760569 Setaria italica
Seita.9G256200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 20754150-20755149 Setaria italica
Seita.9G256200 1.0kb downstream 1.0kb downstream 6420 true scaffold_9: 20755150-20761569 Setaria italica
Seita.9G256200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 20760570-20761569 Setaria italica
Seita.9G256200 2.0kb upstream 2.0kb upstream 7420 true scaffold_9: 20753150-20760569 Setaria italica
Seita.9G256200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 20753150-20755149 Setaria italica
Seita.9G256200 2.0kb downstream 2.0kb downstream 7420 true scaffold_9: 20755150-20762569 Setaria italica
Seita.9G256200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 20760570-20762569 Setaria italica
Seita.9G256200 5.0kb upstream 5.0kb upstream 10420 true scaffold_9: 20750150-20760569 Setaria italica
Seita.9G256200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 20750150-20755149 Setaria italica
Seita.9G256200 5.0kb downstream 5.0kb downstream 10420 true scaffold_9: 20755150-20765569 Setaria italica
Seita.9G256200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 20760570-20765569 Setaria italica
Seita.9G256200 10.0kb upstream 10.0kb upstream 15420 true scaffold_9: 20745150-20760569 Setaria italica
Seita.9G256200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 20745150-20755149 Setaria italica
Seita.9G256200 10.0kb downstream 10.0kb downstream 15420 true scaffold_9: 20755150-20770569 Setaria italica
Seita.9G256200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 20760570-20770569 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179475 5267 Panicoideae View MSA
124578032 5269 Grass View MSA
122048416 5273 Angiosperm View MSA
121348965 5274 Embryophyte View MSA
123424129 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.012     High  
cufflinks 20.824     High High
cufflinks 16.195     High  
cufflinks 14.5     High  
cufflinks 12.683     High Low
cufflinks 20.861     High High
cufflinks 14.39     High  
cufflinks 12.303       Low
cufflinks 12.381       Low
cufflinks 12.035       Low
cufflinks 17.92     High  
cufflinks 19.079     High  
cufflinks 24.066     High High
cufflinks 15.177     High  
cufflinks 20.278     High High
cufflinks 14.426     High  
cufflinks 19.054     High  
cufflinks 16.319     High  
cufflinks 13.343     High  
cufflinks 19.493     High  

0 Strain