Gene : Seita.9G259900 S. italica v2.2
Defline:  (1 of 2) PTHR30231 - DNA POLYMERASE III SUBUNIT EPSILON Genomic Order:  2599
Name:  ? Seita.9G259900 Secondary Identifier:  ? PAC:32692926
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G259900 0.5kb upstream 0.5kb upstream 4451 true scaffold_9: 21367175-21371625 Setaria italica
Seita.9G259900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 21367175-21367674 Setaria italica
Seita.9G259900 0.5kb downstream 0.5kb downstream 4451 true scaffold_9: 21367675-21372125 Setaria italica
Seita.9G259900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 21371626-21372125 Setaria italica
Seita.9G259900 1.0kb upstream 1.0kb upstream 4951 true scaffold_9: 21366675-21371625 Setaria italica
Seita.9G259900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 21366675-21367674 Setaria italica
Seita.9G259900 1.0kb downstream 1.0kb downstream 4951 true scaffold_9: 21367675-21372625 Setaria italica
Seita.9G259900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 21371626-21372625 Setaria italica
Seita.9G259900 2.0kb upstream 2.0kb upstream 5951 true scaffold_9: 21365675-21371625 Setaria italica
Seita.9G259900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 21365675-21367674 Setaria italica
Seita.9G259900 2.0kb downstream 2.0kb downstream 5951 true scaffold_9: 21367675-21373625 Setaria italica
Seita.9G259900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 21371626-21373625 Setaria italica
Seita.9G259900 5.0kb upstream 5.0kb upstream 8951 true scaffold_9: 21362675-21371625 Setaria italica
Seita.9G259900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 21362675-21367674 Setaria italica
Seita.9G259900 5.0kb downstream 5.0kb downstream 8951 true scaffold_9: 21367675-21376625 Setaria italica
Seita.9G259900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 21371626-21376625 Setaria italica
Seita.9G259900 10.0kb upstream 10.0kb upstream 13951 true scaffold_9: 21357675-21371625 Setaria italica
Seita.9G259900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 21357675-21367674 Setaria italica
Seita.9G259900 10.0kb downstream 10.0kb downstream 13951 true scaffold_9: 21367675-21381625 Setaria italica
Seita.9G259900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 21371626-21381625 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196157 5267 Panicoideae View MSA
124573978 5269 Grass View MSA
122046626 5273 Angiosperm View MSA
121346435 5274 Embryophyte View MSA
123380384 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.403        
cufflinks 3.59        
cufflinks 2.485       Low
cufflinks 2.464       Low
cufflinks 2.226       Low
cufflinks 3.75        
cufflinks 4.596        
cufflinks 4.395        
cufflinks 4.256        
cufflinks 6.131        
cufflinks 4.454        
cufflinks 30.562     High High
cufflinks 16.875     High High
cufflinks 4.492        
cufflinks 14.083        
cufflinks 3.839        
cufflinks 7.34        
cufflinks 27.512     High High
cufflinks 23.885     High High
cufflinks 8.929        

0 Strain