Gene : Seita.9G260200 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  2602
Name:  ? Seita.9G260200 Secondary Identifier:  ? PAC:32687389
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G260200 0.5kb upstream 0.5kb upstream 2201 true scaffold_9: 21434023-21436223 Setaria italica
Seita.9G260200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 21434023-21434522 Setaria italica
Seita.9G260200 0.5kb downstream 0.5kb downstream 2201 true scaffold_9: 21434523-21436723 Setaria italica
Seita.9G260200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 21436224-21436723 Setaria italica
Seita.9G260200 1.0kb upstream 1.0kb upstream 2701 true scaffold_9: 21433523-21436223 Setaria italica
Seita.9G260200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 21433523-21434522 Setaria italica
Seita.9G260200 1.0kb downstream 1.0kb downstream 2701 true scaffold_9: 21434523-21437223 Setaria italica
Seita.9G260200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 21436224-21437223 Setaria italica
Seita.9G260200 2.0kb upstream 2.0kb upstream 3701 true scaffold_9: 21432523-21436223 Setaria italica
Seita.9G260200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 21432523-21434522 Setaria italica
Seita.9G260200 2.0kb downstream 2.0kb downstream 3701 true scaffold_9: 21434523-21438223 Setaria italica
Seita.9G260200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 21436224-21438223 Setaria italica
Seita.9G260200 5.0kb upstream 5.0kb upstream 6701 true scaffold_9: 21429523-21436223 Setaria italica
Seita.9G260200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 21429523-21434522 Setaria italica
Seita.9G260200 5.0kb downstream 5.0kb downstream 6701 true scaffold_9: 21434523-21441223 Setaria italica
Seita.9G260200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 21436224-21441223 Setaria italica
Seita.9G260200 10.0kb upstream 10.0kb upstream 11701 true scaffold_9: 21424523-21436223 Setaria italica
Seita.9G260200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 21424523-21434522 Setaria italica
Seita.9G260200 10.0kb downstream 10.0kb downstream 11701 true scaffold_9: 21434523-21446223 Setaria italica
Seita.9G260200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 21436224-21446223 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185739 5267 Panicoideae View MSA
124586216 5269 Grass View MSA
122044387 5273 Angiosperm View MSA
121310287 5274 Embryophyte View MSA
123347814 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.096        
cufflinks 5.505        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.402        
cufflinks 5.729        
cufflinks 1.83        
cufflinks 1.566        
cufflinks 3.362        
cufflinks 3.604        
cufflinks 3.128        
cufflinks 1.06        
cufflinks 9.045       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 9.4       High
cufflinks 0.418        
cufflinks 1.494        
cufflinks 0.075     Low Low
cufflinks 0.083     Low Low
cufflinks 3.736        

0 Strain