Gene : Seita.9G261700 S. italica v2.2
Defline:  (1 of 1) PTHR21091:SF18 - RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I Genomic Order:  2617
Name:  ? Seita.9G261700 Secondary Identifier:  ? PAC:32686610
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G261700 0.5kb upstream 0.5kb upstream 5901 true scaffold_9: 21606831-21612731 Setaria italica
Seita.9G261700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 21612232-21612731 Setaria italica
Seita.9G261700 0.5kb downstream 0.5kb downstream 5901 true scaffold_9: 21606331-21612231 Setaria italica
Seita.9G261700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 21606331-21606830 Setaria italica
Seita.9G261700 1.0kb upstream 1.0kb upstream 6401 true scaffold_9: 21606831-21613231 Setaria italica
Seita.9G261700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 21612232-21613231 Setaria italica
Seita.9G261700 1.0kb downstream 1.0kb downstream 6401 true scaffold_9: 21605831-21612231 Setaria italica
Seita.9G261700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 21605831-21606830 Setaria italica
Seita.9G261700 2.0kb upstream 2.0kb upstream 7401 true scaffold_9: 21606831-21614231 Setaria italica
Seita.9G261700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 21612232-21614231 Setaria italica
Seita.9G261700 2.0kb downstream 2.0kb downstream 7401 true scaffold_9: 21604831-21612231 Setaria italica
Seita.9G261700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 21604831-21606830 Setaria italica
Seita.9G261700 5.0kb upstream 5.0kb upstream 10401 true scaffold_9: 21606831-21617231 Setaria italica
Seita.9G261700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 21612232-21617231 Setaria italica
Seita.9G261700 5.0kb downstream 5.0kb downstream 10401 true scaffold_9: 21601831-21612231 Setaria italica
Seita.9G261700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 21601831-21606830 Setaria italica
Seita.9G261700 10.0kb upstream 10.0kb upstream 15401 true scaffold_9: 21606831-21622231 Setaria italica
Seita.9G261700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 21612232-21622231 Setaria italica
Seita.9G261700 10.0kb downstream 10.0kb downstream 15401 true scaffold_9: 21596831-21612231 Setaria italica
Seita.9G261700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 21596831-21606830 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183912 5267 Panicoideae View MSA
124569923 5269 Grass View MSA
122043278 5273 Angiosperm View MSA
121347213 5274 Embryophyte View MSA
123424563 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.906        
cufflinks 1.059        
cufflinks 0.958        
cufflinks 0.885        
cufflinks 0.971        
cufflinks 1.106        
cufflinks 1.212        
cufflinks 1.34       High
cufflinks 1.641       High
cufflinks 1.153        
cufflinks 0.749        
cufflinks 0.468       Low
cufflinks 0.482       Low
cufflinks 0.626        
cufflinks 0.63        
cufflinks 1.345       High
cufflinks 0.752        
cufflinks 0.988        
cufflinks 0.668        
cufflinks 0.648        

0 Strain