Gene : Seita.9G267000 S. italica v2.2
Defline:  (1 of 1) PTHR23418:SF4 - 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4 Genomic Order:  2670
Name:  ? Seita.9G267000 Secondary Identifier:  ? PAC:32689541
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4361 Setaria italica pathologic  
Sitalica PWY-7270 Setaria italica pathologic  
Sitalica PWY-7528 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G267000 0.5kb upstream 0.5kb upstream 2812 true scaffold_9: 22467006-22469817 Setaria italica
Seita.9G267000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 22467006-22467505 Setaria italica
Seita.9G267000 0.5kb downstream 0.5kb downstream 2812 true scaffold_9: 22467506-22470317 Setaria italica
Seita.9G267000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 22469818-22470317 Setaria italica
Seita.9G267000 1.0kb upstream 1.0kb upstream 3312 true scaffold_9: 22466506-22469817 Setaria italica
Seita.9G267000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 22466506-22467505 Setaria italica
Seita.9G267000 1.0kb downstream 1.0kb downstream 3312 true scaffold_9: 22467506-22470817 Setaria italica
Seita.9G267000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 22469818-22470817 Setaria italica
Seita.9G267000 2.0kb upstream 2.0kb upstream 4312 true scaffold_9: 22465506-22469817 Setaria italica
Seita.9G267000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 22465506-22467505 Setaria italica
Seita.9G267000 2.0kb downstream 2.0kb downstream 4312 true scaffold_9: 22467506-22471817 Setaria italica
Seita.9G267000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 22469818-22471817 Setaria italica
Seita.9G267000 5.0kb upstream 5.0kb upstream 7312 true scaffold_9: 22462506-22469817 Setaria italica
Seita.9G267000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 22462506-22467505 Setaria italica
Seita.9G267000 5.0kb downstream 5.0kb downstream 7312 true scaffold_9: 22467506-22474817 Setaria italica
Seita.9G267000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 22469818-22474817 Setaria italica
Seita.9G267000 10.0kb upstream 10.0kb upstream 12312 true scaffold_9: 22457506-22469817 Setaria italica
Seita.9G267000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 22457506-22467505 Setaria italica
Seita.9G267000 10.0kb downstream 10.0kb downstream 12312 true scaffold_9: 22467506-22479817 Setaria italica
Seita.9G267000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 22469818-22479817 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180959 5267 Panicoideae View MSA
124572378 5269 Grass View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.978       Low
cufflinks 21.567     High  
cufflinks 91.774     High High
cufflinks 92.97     High High
cufflinks 58.508     High  
cufflinks 16.633     High  
cufflinks 23.953     High  
cufflinks 73.937     High High
cufflinks 20.979     High  
cufflinks 17.017     High  
cufflinks 12.794       Low
cufflinks 15.747     High  
cufflinks 20.576     High  
cufflinks 95.248     High High
cufflinks 23.814     High  
cufflinks 32.886     High  
cufflinks 18.479     High  
cufflinks 21.064     High  
cufflinks 105.774     High High
cufflinks 17.271     High  

0 Strain