Gene : Seita.9G278200 S. italica v2.2
Defline:  (1 of 2) PTHR13011 - TFIIF-ALPHA Genomic Order:  2782
Name:  ? Seita.9G278200 Secondary Identifier:  ? PAC:32688187
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G278200 0.5kb upstream 0.5kb upstream 10042 true scaffold_9: 26456698-26466739 Setaria italica
Seita.9G278200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 26456698-26457197 Setaria italica
Seita.9G278200 0.5kb downstream 0.5kb downstream 10042 true scaffold_9: 26457198-26467239 Setaria italica
Seita.9G278200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 26466740-26467239 Setaria italica
Seita.9G278200 1.0kb upstream 1.0kb upstream 10542 true scaffold_9: 26456198-26466739 Setaria italica
Seita.9G278200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 26456198-26457197 Setaria italica
Seita.9G278200 1.0kb downstream 1.0kb downstream 10542 true scaffold_9: 26457198-26467739 Setaria italica
Seita.9G278200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 26466740-26467739 Setaria italica
Seita.9G278200 2.0kb upstream 2.0kb upstream 11542 true scaffold_9: 26455198-26466739 Setaria italica
Seita.9G278200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 26455198-26457197 Setaria italica
Seita.9G278200 2.0kb downstream 2.0kb downstream 11542 true scaffold_9: 26457198-26468739 Setaria italica
Seita.9G278200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 26466740-26468739 Setaria italica
Seita.9G278200 5.0kb upstream 5.0kb upstream 14542 true scaffold_9: 26452198-26466739 Setaria italica
Seita.9G278200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 26452198-26457197 Setaria italica
Seita.9G278200 5.0kb downstream 5.0kb downstream 14542 true scaffold_9: 26457198-26471739 Setaria italica
Seita.9G278200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 26466740-26471739 Setaria italica
Seita.9G278200 10.0kb upstream 10.0kb upstream 19542 true scaffold_9: 26447198-26466739 Setaria italica
Seita.9G278200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 26447198-26457197 Setaria italica
Seita.9G278200 10.0kb downstream 10.0kb downstream 19542 true scaffold_9: 26457198-26476739 Setaria italica
Seita.9G278200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 26466740-26476739 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194906 5267 Panicoideae View MSA
124571540 5269 Grass View MSA
122042161 5273 Angiosperm View MSA
121347251 5274 Embryophyte View MSA
123426399 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.441       High
cufflinks 5.872        
cufflinks 3.721        
cufflinks 4.053        
cufflinks 3.727        
cufflinks 6.616       High
cufflinks 4.689        
cufflinks 4.618        
cufflinks 4.277        
cufflinks 3.108       Low
cufflinks 4.852        
cufflinks 6.685       High
cufflinks 4.269        
cufflinks 3.501       Low
cufflinks 6.24        
cufflinks 4.959        
cufflinks 6.166        
cufflinks 8.931       High
cufflinks 3.416       Low
cufflinks 5.169        

0 Strain