Gene : Seita.9G283700 S. italica v2.2
Defline:  (1 of 6) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  2837
Name:  ? Seita.9G283700 Secondary Identifier:  ? PAC:32689126
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G283700 0.5kb upstream 0.5kb upstream 13990 true scaffold_9: 30384142-30398131 Setaria italica
Seita.9G283700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 30384142-30384641 Setaria italica
Seita.9G283700 0.5kb downstream 0.5kb downstream 13990 true scaffold_9: 30384642-30398631 Setaria italica
Seita.9G283700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 30398132-30398631 Setaria italica
Seita.9G283700 1.0kb upstream 1.0kb upstream 14490 true scaffold_9: 30383642-30398131 Setaria italica
Seita.9G283700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 30383642-30384641 Setaria italica
Seita.9G283700 1.0kb downstream 1.0kb downstream 14490 true scaffold_9: 30384642-30399131 Setaria italica
Seita.9G283700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 30398132-30399131 Setaria italica
Seita.9G283700 2.0kb upstream 2.0kb upstream 15490 true scaffold_9: 30382642-30398131 Setaria italica
Seita.9G283700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 30382642-30384641 Setaria italica
Seita.9G283700 2.0kb downstream 2.0kb downstream 15490 true scaffold_9: 30384642-30400131 Setaria italica
Seita.9G283700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 30398132-30400131 Setaria italica
Seita.9G283700 5.0kb upstream 5.0kb upstream 18490 true scaffold_9: 30379642-30398131 Setaria italica
Seita.9G283700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 30379642-30384641 Setaria italica
Seita.9G283700 5.0kb downstream 5.0kb downstream 18490 true scaffold_9: 30384642-30403131 Setaria italica
Seita.9G283700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 30398132-30403131 Setaria italica
Seita.9G283700 10.0kb upstream 10.0kb upstream 23490 true scaffold_9: 30374642-30398131 Setaria italica
Seita.9G283700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 30374642-30384641 Setaria italica
Seita.9G283700 10.0kb downstream 10.0kb downstream 23490 true scaffold_9: 30384642-30408131 Setaria italica
Seita.9G283700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 30398132-30408131 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184720 5267 Panicoideae View MSA
124569806 5269 Grass View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.039     High  
cufflinks 24.598     High  
cufflinks 25.737     High  
cufflinks 20.484     High  
cufflinks 22.038     High  
cufflinks 25.615     High  
cufflinks 22.075     High  
cufflinks 19.439     High  
cufflinks 29.438     High High
cufflinks 12.268       Low
cufflinks 27.858     High  
cufflinks 27.017     High  
cufflinks 22.892     High  
cufflinks 24.525     High  
cufflinks 30.622     High High
cufflinks 22.128     High  
cufflinks 24.733     High  
cufflinks 25.579     High  
cufflinks 16.132     High Low
cufflinks 26.953     High  

0 Strain