Gene : Seita.9G379800 S. italica v2.2
Defline:  (1 of 12) KOG1546 - Metacaspase involved in regulation of apoptosis Genomic Order:  3798
Name:  ? Seita.9G379800 Secondary Identifier:  ? PAC:32686662
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G379800 0.5kb upstream 0.5kb upstream 2409 true scaffold_9: 43905914-43908322 Setaria italica
Seita.9G379800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 43905914-43906413 Setaria italica
Seita.9G379800 0.5kb downstream 0.5kb downstream 2409 true scaffold_9: 43906414-43908822 Setaria italica
Seita.9G379800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 43908323-43908822 Setaria italica
Seita.9G379800 1.0kb upstream 1.0kb upstream 2909 true scaffold_9: 43905414-43908322 Setaria italica
Seita.9G379800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 43905414-43906413 Setaria italica
Seita.9G379800 1.0kb downstream 1.0kb downstream 2909 true scaffold_9: 43906414-43909322 Setaria italica
Seita.9G379800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 43908323-43909322 Setaria italica
Seita.9G379800 2.0kb upstream 2.0kb upstream 3909 true scaffold_9: 43904414-43908322 Setaria italica
Seita.9G379800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 43904414-43906413 Setaria italica
Seita.9G379800 2.0kb downstream 2.0kb downstream 3909 true scaffold_9: 43906414-43910322 Setaria italica
Seita.9G379800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 43908323-43910322 Setaria italica
Seita.9G379800 5.0kb upstream 5.0kb upstream 6909 true scaffold_9: 43901414-43908322 Setaria italica
Seita.9G379800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 43901414-43906413 Setaria italica
Seita.9G379800 5.0kb downstream 5.0kb downstream 6909 true scaffold_9: 43906414-43913322 Setaria italica
Seita.9G379800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 43908323-43913322 Setaria italica
Seita.9G379800 10.0kb upstream 10.0kb upstream 11909 true scaffold_9: 43896414-43908322 Setaria italica
Seita.9G379800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 43896414-43906413 Setaria italica
Seita.9G379800 10.0kb downstream 10.0kb downstream 11909 true scaffold_9: 43906414-43918322 Setaria italica
Seita.9G379800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 43908323-43918322 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994792 5273 Angiosperm View MSA
122181707 5267 Panicoideae View MSA
124585668 5269 Grass View MSA
123428899 5275 Viridiplantae View MSA
121265007 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.555     High  
cufflinks 2.018       Low
cufflinks 185.781     High High
cufflinks 188.119     High High
cufflinks 61.535     High  
cufflinks 1.465       Low
cufflinks 20.294     High  
cufflinks 86.913     High  
cufflinks 17.006     High  
cufflinks 123.12     High  
cufflinks 49.948     High  
cufflinks 1.981       Low
cufflinks 0.558       Low
cufflinks 179.528     High High
cufflinks 0.817       Low
cufflinks 32.092     High  
cufflinks 2.465        
cufflinks 17.148     High  
cufflinks 152.037     High High
cufflinks 1.382       Low

0 Strain