Gene : Seita.9G380300 S. italica v2.2
Defline:  (1 of 1) PTHR12059 - RIBOSOMAL PROTEIN L23-RELATED Genomic Order:  3803
Name:  ? Seita.9G380300 Secondary Identifier:  ? PAC:32691340
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G380300 0.5kb upstream 0.5kb upstream 3691 true scaffold_9: 43966559-43970249 Setaria italica
Seita.9G380300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 43966559-43967058 Setaria italica
Seita.9G380300 0.5kb downstream 0.5kb downstream 3691 true scaffold_9: 43967059-43970749 Setaria italica
Seita.9G380300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 43970250-43970749 Setaria italica
Seita.9G380300 1.0kb upstream 1.0kb upstream 4191 true scaffold_9: 43966059-43970249 Setaria italica
Seita.9G380300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 43966059-43967058 Setaria italica
Seita.9G380300 1.0kb downstream 1.0kb downstream 4191 true scaffold_9: 43967059-43971249 Setaria italica
Seita.9G380300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 43970250-43971249 Setaria italica
Seita.9G380300 2.0kb upstream 2.0kb upstream 5191 true scaffold_9: 43965059-43970249 Setaria italica
Seita.9G380300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 43965059-43967058 Setaria italica
Seita.9G380300 2.0kb downstream 2.0kb downstream 5191 true scaffold_9: 43967059-43972249 Setaria italica
Seita.9G380300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 43970250-43972249 Setaria italica
Seita.9G380300 5.0kb upstream 5.0kb upstream 8191 true scaffold_9: 43962059-43970249 Setaria italica
Seita.9G380300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 43962059-43967058 Setaria italica
Seita.9G380300 5.0kb downstream 5.0kb downstream 8191 true scaffold_9: 43967059-43975249 Setaria italica
Seita.9G380300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 43970250-43975249 Setaria italica
Seita.9G380300 10.0kb upstream 10.0kb upstream 13191 true scaffold_9: 43957059-43970249 Setaria italica
Seita.9G380300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 43957059-43967058 Setaria italica
Seita.9G380300 10.0kb downstream 10.0kb downstream 13191 true scaffold_9: 43967059-43980249 Setaria italica
Seita.9G380300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 43970250-43980249 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178153 5267 Panicoideae View MSA
124569734 5269 Grass View MSA
122044444 5273 Angiosperm View MSA
121349805 5274 Embryophyte View MSA
123426659 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.416        
cufflinks 11.053       High
cufflinks 2.441       Low
cufflinks 2.215       Low
cufflinks 3.158       Low
cufflinks 9.993        
cufflinks 6.053        
cufflinks 7.652        
cufflinks 7.441        
cufflinks 7.639        
cufflinks 8.186        
cufflinks 7.583        
cufflinks 6.221        
cufflinks 5.918        
cufflinks 8.506        
cufflinks 4.275        
cufflinks 10.443       High
cufflinks 5.518        
cufflinks 2.333       Low
cufflinks 10.972       High

0 Strain