Gene : Seita.9G378700 S. italica v2.2
Defline:  (1 of 1) 3.5.2.17 - Hydroxyisourate hydrolase / HIUHase Genomic Order:  3787
Name:  ? Seita.9G378700 Secondary Identifier:  ? PAC:32689884
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5691 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G378700 0.5kb upstream 0.5kb upstream 3517 true scaffold_9: 43809902-43813418 Setaria italica
Seita.9G378700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 43812919-43813418 Setaria italica
Seita.9G378700 0.5kb downstream 0.5kb downstream 3517 true scaffold_9: 43809402-43812918 Setaria italica
Seita.9G378700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 43809402-43809901 Setaria italica
Seita.9G378700 1.0kb upstream 1.0kb upstream 4017 true scaffold_9: 43809902-43813918 Setaria italica
Seita.9G378700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 43812919-43813918 Setaria italica
Seita.9G378700 1.0kb downstream 1.0kb downstream 4017 true scaffold_9: 43808902-43812918 Setaria italica
Seita.9G378700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 43808902-43809901 Setaria italica
Seita.9G378700 2.0kb upstream 2.0kb upstream 5017 true scaffold_9: 43809902-43814918 Setaria italica
Seita.9G378700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 43812919-43814918 Setaria italica
Seita.9G378700 2.0kb downstream 2.0kb downstream 5017 true scaffold_9: 43807902-43812918 Setaria italica
Seita.9G378700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 43807902-43809901 Setaria italica
Seita.9G378700 5.0kb upstream 5.0kb upstream 8017 true scaffold_9: 43809902-43817918 Setaria italica
Seita.9G378700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 43812919-43817918 Setaria italica
Seita.9G378700 5.0kb downstream 5.0kb downstream 8017 true scaffold_9: 43804902-43812918 Setaria italica
Seita.9G378700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 43804902-43809901 Setaria italica
Seita.9G378700 10.0kb upstream 10.0kb upstream 13017 true scaffold_9: 43809902-43822918 Setaria italica
Seita.9G378700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 43812919-43822918 Setaria italica
Seita.9G378700 10.0kb downstream 10.0kb downstream 13017 true scaffold_9: 43799902-43812918 Setaria italica
Seita.9G378700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 43799902-43809901 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178442 5267 Panicoideae View MSA
124577754 5269 Grass View MSA
122045927 5273 Angiosperm View MSA
121344098 5274 Embryophyte View MSA
123423784 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.468        
cufflinks 3.988        
cufflinks 4.105        
cufflinks 4.746        
cufflinks 3.903        
cufflinks 4.19        
cufflinks 4.309        
cufflinks 4.871        
cufflinks 3.74       Low
cufflinks 8.042       High
cufflinks 3.782       Low
cufflinks 4.222        
cufflinks 5.09        
cufflinks 4.425        
cufflinks 4.62        
cufflinks 4.695        
cufflinks 5.097        
cufflinks 4.71        
cufflinks 3.867        
cufflinks 4.564        

0 Strain