Gene : Seita.9G381700 S. italica v2.2
Defline:  (1 of 5) PTHR22847//PTHR22847:SF453 - WD40 REPEAT PROTEIN Genomic Order:  3817
Name:  ? Seita.9G381700 Secondary Identifier:  ? PAC:32690521
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G381700 0.5kb upstream 0.5kb upstream 5379 true scaffold_9: 44073508-44078886 Setaria italica
Seita.9G381700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 44078387-44078886 Setaria italica
Seita.9G381700 0.5kb downstream 0.5kb downstream 5379 true scaffold_9: 44073008-44078386 Setaria italica
Seita.9G381700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 44073008-44073507 Setaria italica
Seita.9G381700 1.0kb upstream 1.0kb upstream 5879 true scaffold_9: 44073508-44079386 Setaria italica
Seita.9G381700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 44078387-44079386 Setaria italica
Seita.9G381700 1.0kb downstream 1.0kb downstream 5879 true scaffold_9: 44072508-44078386 Setaria italica
Seita.9G381700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 44072508-44073507 Setaria italica
Seita.9G381700 2.0kb upstream 2.0kb upstream 6879 true scaffold_9: 44073508-44080386 Setaria italica
Seita.9G381700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 44078387-44080386 Setaria italica
Seita.9G381700 2.0kb downstream 2.0kb downstream 6879 true scaffold_9: 44071508-44078386 Setaria italica
Seita.9G381700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 44071508-44073507 Setaria italica
Seita.9G381700 5.0kb upstream 5.0kb upstream 9879 true scaffold_9: 44073508-44083386 Setaria italica
Seita.9G381700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 44078387-44083386 Setaria italica
Seita.9G381700 5.0kb downstream 5.0kb downstream 9879 true scaffold_9: 44068508-44078386 Setaria italica
Seita.9G381700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 44068508-44073507 Setaria italica
Seita.9G381700 10.0kb upstream 10.0kb upstream 14879 true scaffold_9: 44073508-44088386 Setaria italica
Seita.9G381700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 44078387-44088386 Setaria italica
Seita.9G381700 10.0kb downstream 10.0kb downstream 14879 true scaffold_9: 44063508-44078386 Setaria italica
Seita.9G381700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 44063508-44073507 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197478 5267 Panicoideae View MSA
124569547 5269 Grass View MSA
122045317 5273 Angiosperm View MSA
121348063 5274 Embryophyte View MSA
123428605 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.649        
cufflinks 0.797       Low
cufflinks 21.938     High High
cufflinks 29.27     High High
cufflinks 12.556     High  
cufflinks 0.629       Low
cufflinks 3.495        
cufflinks 8.587        
cufflinks 4.79        
cufflinks 0.523       Low
cufflinks 1.093       Low
cufflinks 14.331     High  
cufflinks 7.415        
cufflinks 21.853     High High
cufflinks 1.791        
cufflinks 5.058        
cufflinks 2.375        
cufflinks 25.215     High High
cufflinks 34.294     High High
cufflinks 2.078        

0 Strain