Gene : Seita.9G393600 S. italica v2.2
Defline:  (1 of 5) PTHR13989 - REPLICATION PROTEIN A-RELATED Genomic Order:  3936
Name:  ? Seita.9G393600 Secondary Identifier:  ? PAC:32692261
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G393600 0.5kb upstream 0.5kb upstream 9125 true scaffold_9: 45610796-45619920 Setaria italica
Seita.9G393600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 45610796-45611295 Setaria italica
Seita.9G393600 0.5kb downstream 0.5kb downstream 9125 true scaffold_9: 45611296-45620420 Setaria italica
Seita.9G393600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 45619921-45620420 Setaria italica
Seita.9G393600 1.0kb upstream 1.0kb upstream 9625 true scaffold_9: 45610296-45619920 Setaria italica
Seita.9G393600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 45610296-45611295 Setaria italica
Seita.9G393600 1.0kb downstream 1.0kb downstream 9625 true scaffold_9: 45611296-45620920 Setaria italica
Seita.9G393600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 45619921-45620920 Setaria italica
Seita.9G393600 2.0kb upstream 2.0kb upstream 10625 true scaffold_9: 45609296-45619920 Setaria italica
Seita.9G393600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 45609296-45611295 Setaria italica
Seita.9G393600 2.0kb downstream 2.0kb downstream 10625 true scaffold_9: 45611296-45621920 Setaria italica
Seita.9G393600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 45619921-45621920 Setaria italica
Seita.9G393600 5.0kb upstream 5.0kb upstream 13625 true scaffold_9: 45606296-45619920 Setaria italica
Seita.9G393600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 45606296-45611295 Setaria italica
Seita.9G393600 5.0kb downstream 5.0kb downstream 13625 true scaffold_9: 45611296-45624920 Setaria italica
Seita.9G393600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 45619921-45624920 Setaria italica
Seita.9G393600 10.0kb upstream 10.0kb upstream 18625 true scaffold_9: 45601296-45619920 Setaria italica
Seita.9G393600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 45601296-45611295 Setaria italica
Seita.9G393600 10.0kb downstream 10.0kb downstream 18625 true scaffold_9: 45611296-45629920 Setaria italica
Seita.9G393600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 45619921-45629920 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188212 5267 Panicoideae View MSA
124583404 5269 Grass View MSA
122044102 5273 Angiosperm View MSA
121345132 5274 Embryophyte View MSA
123425190 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.624        
cufflinks 0.677        
cufflinks 0.318        
cufflinks 0.162       Low
cufflinks 0.322        
cufflinks 0.731       High
cufflinks 0.4        
cufflinks 0.404        
cufflinks 0.586        
cufflinks 0.494        
cufflinks 0.555        
cufflinks 0.338        
cufflinks 0.259        
cufflinks 0.294        
cufflinks 0.318        
cufflinks 0.791       High
cufflinks 0.49        
cufflinks 0.838       High
cufflinks 0.093       Low
cufflinks 0.41        

0 Strain