Gene : Seita.9G398200 S. italica v2.2
Defline:  (1 of 1) PTHR11592:SF17 - GLUTATHIONE PEROXIDASE 4-RELATED Genomic Order:  3982
Name:  ? Seita.9G398200 Secondary Identifier:  ? PAC:32692157
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica DETOX1-PWY-1 Setaria italica pathologic  
Sitalica PWY-4081 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G398200 0.5kb upstream 0.5kb upstream 3335 true scaffold_9: 45905469-45908803 Setaria italica
Seita.9G398200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 45908304-45908803 Setaria italica
Seita.9G398200 0.5kb downstream 0.5kb downstream 3335 true scaffold_9: 45904969-45908303 Setaria italica
Seita.9G398200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 45904969-45905468 Setaria italica
Seita.9G398200 1.0kb upstream 1.0kb upstream 3835 true scaffold_9: 45905469-45909303 Setaria italica
Seita.9G398200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 45908304-45909303 Setaria italica
Seita.9G398200 1.0kb downstream 1.0kb downstream 3835 true scaffold_9: 45904469-45908303 Setaria italica
Seita.9G398200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 45904469-45905468 Setaria italica
Seita.9G398200 2.0kb upstream 2.0kb upstream 4835 true scaffold_9: 45905469-45910303 Setaria italica
Seita.9G398200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 45908304-45910303 Setaria italica
Seita.9G398200 2.0kb downstream 2.0kb downstream 4835 true scaffold_9: 45903469-45908303 Setaria italica
Seita.9G398200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 45903469-45905468 Setaria italica
Seita.9G398200 5.0kb upstream 5.0kb upstream 7835 true scaffold_9: 45905469-45913303 Setaria italica
Seita.9G398200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 45908304-45913303 Setaria italica
Seita.9G398200 5.0kb downstream 5.0kb downstream 7835 true scaffold_9: 45900469-45908303 Setaria italica
Seita.9G398200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 45900469-45905468 Setaria italica
Seita.9G398200 10.0kb upstream 10.0kb upstream 12835 true scaffold_9: 45905469-45918303 Setaria italica
Seita.9G398200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 45908304-45918303 Setaria italica
Seita.9G398200 10.0kb downstream 10.0kb downstream 12835 true scaffold_9: 45895469-45908303 Setaria italica
Seita.9G398200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 45895469-45905468 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026200 5273 Angiosperm View MSA
122188732 5267 Panicoideae View MSA
124577446 5269 Grass View MSA
121296225 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.522     High  
cufflinks 21.568     High  
cufflinks 7.136       Low
cufflinks 5.602       Low
cufflinks 6.554       Low
cufflinks 23.634     High High
cufflinks 17.685     High  
cufflinks 15.183     High  
cufflinks 11.311        
cufflinks 21.067     High  
cufflinks 16.109     High  
cufflinks 16.026     High  
cufflinks 16.918     High  
cufflinks 13.04        
cufflinks 18.762     High  
cufflinks 17.991     High  
cufflinks 20.5     High  
cufflinks 18.801     High  
cufflinks 11.479     High  
cufflinks 17.982     High  

0 Strain