Gene : Seita.9G397200 S. italica v2.2
Defline:  (1 of 1) PTHR13068//PTHR13068:SF22 - CGI-12 PROTEIN-RELATED Genomic Order:  3972
Name:  ? Seita.9G397200 Secondary Identifier:  ? PAC:32689697
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G397200 0.5kb upstream 0.5kb upstream 2597 true scaffold_9: 45836115-45838711 Setaria italica
Seita.9G397200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 45838212-45838711 Setaria italica
Seita.9G397200 0.5kb downstream 0.5kb downstream 2597 true scaffold_9: 45835615-45838211 Setaria italica
Seita.9G397200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 45835615-45836114 Setaria italica
Seita.9G397200 1.0kb upstream 1.0kb upstream 3097 true scaffold_9: 45836115-45839211 Setaria italica
Seita.9G397200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 45838212-45839211 Setaria italica
Seita.9G397200 1.0kb downstream 1.0kb downstream 3097 true scaffold_9: 45835115-45838211 Setaria italica
Seita.9G397200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 45835115-45836114 Setaria italica
Seita.9G397200 2.0kb upstream 2.0kb upstream 4097 true scaffold_9: 45836115-45840211 Setaria italica
Seita.9G397200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 45838212-45840211 Setaria italica
Seita.9G397200 2.0kb downstream 2.0kb downstream 4097 true scaffold_9: 45834115-45838211 Setaria italica
Seita.9G397200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 45834115-45836114 Setaria italica
Seita.9G397200 5.0kb upstream 5.0kb upstream 7097 true scaffold_9: 45836115-45843211 Setaria italica
Seita.9G397200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 45838212-45843211 Setaria italica
Seita.9G397200 5.0kb downstream 5.0kb downstream 7097 true scaffold_9: 45831115-45838211 Setaria italica
Seita.9G397200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 45831115-45836114 Setaria italica
Seita.9G397200 10.0kb upstream 10.0kb upstream 12097 true scaffold_9: 45836115-45848211 Setaria italica
Seita.9G397200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 45838212-45848211 Setaria italica
Seita.9G397200 10.0kb downstream 10.0kb downstream 12097 true scaffold_9: 45826115-45838211 Setaria italica
Seita.9G397200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 45826115-45836114 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196439 5267 Panicoideae View MSA
124576776 5269 Grass View MSA
122047592 5273 Angiosperm View MSA
121347961 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.123     Low  
cufflinks 0.273        
cufflinks 0.566        
cufflinks 1.572        
cufflinks 1.764       High
cufflinks 0.423        
cufflinks 1.108        
cufflinks 1.57        
cufflinks 0.65        
cufflinks 1.174        
cufflinks 0.086     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.86       High
cufflinks 0.022     Low Low
cufflinks 1.018        
cufflinks 0.031     Low Low
cufflinks 0.09     Low  
cufflinks 0.631        
cufflinks 0.017     Low Low

0 Strain