Gene : Seita.9G400000 S. italica v2.2
Defline:  (1 of 1) PTHR13247//PTHR13247:SF2 - TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 Genomic Order:  4000
Name:  ? Seita.9G400000 Secondary Identifier:  ? PAC:32688576
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G400000 0.5kb upstream 0.5kb upstream 3255 true scaffold_9: 46068565-46071819 Setaria italica
Seita.9G400000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46068565-46069064 Setaria italica
Seita.9G400000 0.5kb downstream 0.5kb downstream 3255 true scaffold_9: 46069065-46072319 Setaria italica
Seita.9G400000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46071820-46072319 Setaria italica
Seita.9G400000 1.0kb upstream 1.0kb upstream 3755 true scaffold_9: 46068065-46071819 Setaria italica
Seita.9G400000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46068065-46069064 Setaria italica
Seita.9G400000 1.0kb downstream 1.0kb downstream 3755 true scaffold_9: 46069065-46072819 Setaria italica
Seita.9G400000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46071820-46072819 Setaria italica
Seita.9G400000 2.0kb upstream 2.0kb upstream 4755 true scaffold_9: 46067065-46071819 Setaria italica
Seita.9G400000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46067065-46069064 Setaria italica
Seita.9G400000 2.0kb downstream 2.0kb downstream 4755 true scaffold_9: 46069065-46073819 Setaria italica
Seita.9G400000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46071820-46073819 Setaria italica
Seita.9G400000 5.0kb upstream 5.0kb upstream 7755 true scaffold_9: 46064065-46071819 Setaria italica
Seita.9G400000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46064065-46069064 Setaria italica
Seita.9G400000 5.0kb downstream 5.0kb downstream 7755 true scaffold_9: 46069065-46076819 Setaria italica
Seita.9G400000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46071820-46076819 Setaria italica
Seita.9G400000 10.0kb upstream 10.0kb upstream 12755 true scaffold_9: 46059065-46071819 Setaria italica
Seita.9G400000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46059065-46069064 Setaria italica
Seita.9G400000 10.0kb downstream 10.0kb downstream 12755 true scaffold_9: 46069065-46081819 Setaria italica
Seita.9G400000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46071820-46081819 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177333 5267 Panicoideae View MSA
124577122 5269 Grass View MSA
122046203 5273 Angiosperm View MSA
123429111 5275 Viridiplantae View MSA
121347777 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.01        
cufflinks 7.733       High
cufflinks 1.637       Low
cufflinks 1.254       Low
cufflinks 1.872       Low
cufflinks 6.828        
cufflinks 3.403        
cufflinks 2.747        
cufflinks 3.596        
cufflinks 6.267        
cufflinks 5.002        
cufflinks 10.414       High
cufflinks 5.516        
cufflinks 2.369       Low
cufflinks 4.848        
cufflinks 3.779        
cufflinks 6.664        
cufflinks 7.421       High
cufflinks 3.461        
cufflinks 5.125        

0 Strain