Gene : Seita.9G400600 S. italica v2.2
Defline:  (1 of 1) PTHR11655:SF14 - 54S RIBOSOMAL PROTEIN L6, MITOCHONDRIAL Genomic Order:  4006
Name:  ? Seita.9G400600 Secondary Identifier:  ? PAC:32687151
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G400600 0.5kb upstream 0.5kb upstream 3374 true scaffold_9: 46098371-46101744 Setaria italica
Seita.9G400600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46098371-46098870 Setaria italica
Seita.9G400600 0.5kb downstream 0.5kb downstream 3374 true scaffold_9: 46098871-46102244 Setaria italica
Seita.9G400600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46101745-46102244 Setaria italica
Seita.9G400600 1.0kb upstream 1.0kb upstream 3874 true scaffold_9: 46097871-46101744 Setaria italica
Seita.9G400600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46097871-46098870 Setaria italica
Seita.9G400600 1.0kb downstream 1.0kb downstream 3874 true scaffold_9: 46098871-46102744 Setaria italica
Seita.9G400600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46101745-46102744 Setaria italica
Seita.9G400600 2.0kb upstream 2.0kb upstream 4874 true scaffold_9: 46096871-46101744 Setaria italica
Seita.9G400600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46096871-46098870 Setaria italica
Seita.9G400600 2.0kb downstream 2.0kb downstream 4874 true scaffold_9: 46098871-46103744 Setaria italica
Seita.9G400600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46101745-46103744 Setaria italica
Seita.9G400600 5.0kb upstream 5.0kb upstream 7874 true scaffold_9: 46093871-46101744 Setaria italica
Seita.9G400600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46093871-46098870 Setaria italica
Seita.9G400600 5.0kb downstream 5.0kb downstream 7874 true scaffold_9: 46098871-46106744 Setaria italica
Seita.9G400600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46101745-46106744 Setaria italica
Seita.9G400600 10.0kb upstream 10.0kb upstream 12874 true scaffold_9: 46088871-46101744 Setaria italica
Seita.9G400600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46088871-46098870 Setaria italica
Seita.9G400600 10.0kb downstream 10.0kb downstream 12874 true scaffold_9: 46098871-46111744 Setaria italica
Seita.9G400600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46101745-46111744 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175354 5267 Panicoideae View MSA
124573754 5269 Grass View MSA
122045909 5273 Angiosperm View MSA
121344403 5274 Embryophyte View MSA
123424152 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.033     High  
cufflinks 20.798     High  
cufflinks 26.232     High  
cufflinks 21.824     High  
cufflinks 69.229     High High
cufflinks 21.194     High  
cufflinks 73.506     High High
cufflinks 111.451     High High
cufflinks 162.846     High High
cufflinks 19.11     High  
cufflinks 17.772     High  
cufflinks 2.05       Low
cufflinks 4.153       Low
cufflinks 31.874     High  
cufflinks 2.491       Low
cufflinks 45.634     High  
cufflinks 2.58       Low
cufflinks 13.415     High  
cufflinks 21.32     High  
cufflinks 2.431       Low

0 Strain