Gene : Seita.9G399500 S. italica v2.2
Defline:  (1 of 1) PTHR23086//PTHR23086:SF57 - PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE Genomic Order:  3995
Name:  ? Seita.9G399500 Secondary Identifier:  ? PAC:32687289
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6351 Setaria italica pathologic  
Sitalica PWY-6352 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G399500 0.5kb upstream 0.5kb upstream 4320 true scaffold_9: 46028109-46032428 Setaria italica
Seita.9G399500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46031929-46032428 Setaria italica
Seita.9G399500 0.5kb downstream 0.5kb downstream 4320 true scaffold_9: 46027609-46031928 Setaria italica
Seita.9G399500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46027609-46028108 Setaria italica
Seita.9G399500 1.0kb upstream 1.0kb upstream 4820 true scaffold_9: 46028109-46032928 Setaria italica
Seita.9G399500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46031929-46032928 Setaria italica
Seita.9G399500 1.0kb downstream 1.0kb downstream 4820 true scaffold_9: 46027109-46031928 Setaria italica
Seita.9G399500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46027109-46028108 Setaria italica
Seita.9G399500 2.0kb upstream 2.0kb upstream 5820 true scaffold_9: 46028109-46033928 Setaria italica
Seita.9G399500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46031929-46033928 Setaria italica
Seita.9G399500 2.0kb downstream 2.0kb downstream 5820 true scaffold_9: 46026109-46031928 Setaria italica
Seita.9G399500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46026109-46028108 Setaria italica
Seita.9G399500 5.0kb upstream 5.0kb upstream 8820 true scaffold_9: 46028109-46036928 Setaria italica
Seita.9G399500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46031929-46036928 Setaria italica
Seita.9G399500 5.0kb downstream 5.0kb downstream 8820 true scaffold_9: 46023109-46031928 Setaria italica
Seita.9G399500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46023109-46028108 Setaria italica
Seita.9G399500 10.0kb upstream 10.0kb upstream 13820 true scaffold_9: 46028109-46041928 Setaria italica
Seita.9G399500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46031929-46041928 Setaria italica
Seita.9G399500 10.0kb downstream 10.0kb downstream 13820 true scaffold_9: 46018109-46031928 Setaria italica
Seita.9G399500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46018109-46028108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027967 5273 Angiosperm View MSA
122195445 5267 Panicoideae View MSA
124576600 5269 Grass View MSA
121349579 5274 Embryophyte View MSA
123428114 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.037     Low  
cufflinks 0.151       High
cufflinks 0.013     Low Low
cufflinks 0.009     Low Low
cufflinks 0.016     Low  
cufflinks 0.127     Low High
cufflinks 0.033     Low  
cufflinks 0.067     Low  
cufflinks 0.044     Low  
cufflinks 0.019     Low  
cufflinks 0.051     Low  
cufflinks 0.036     Low  
cufflinks 0.028     Low  
cufflinks 0.008     Low Low
cufflinks 0.062     Low  
cufflinks 0.029     Low  
cufflinks 0.04     Low  
cufflinks 0.037     Low  
cufflinks 0.006     Low Low
cufflinks 0.067     Low  

0 Strain