Gene : Seita.9G403000 S. italica v2.2
Defline:  (1 of 2) PTHR10894:SF0 - NUCLEOLAR PROTEIN 56 Genomic Order:  4030
Name:  ? Seita.9G403000 Secondary Identifier:  ? PAC:32686817
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G403000 0.5kb upstream 0.5kb upstream 3333 true scaffold_9: 46253250-46256582 Setaria italica
Seita.9G403000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46253250-46253749 Setaria italica
Seita.9G403000 0.5kb downstream 0.5kb downstream 3333 true scaffold_9: 46253750-46257082 Setaria italica
Seita.9G403000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46256583-46257082 Setaria italica
Seita.9G403000 1.0kb upstream 1.0kb upstream 3833 true scaffold_9: 46252750-46256582 Setaria italica
Seita.9G403000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46252750-46253749 Setaria italica
Seita.9G403000 1.0kb downstream 1.0kb downstream 3833 true scaffold_9: 46253750-46257582 Setaria italica
Seita.9G403000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46256583-46257582 Setaria italica
Seita.9G403000 2.0kb upstream 2.0kb upstream 4833 true scaffold_9: 46251750-46256582 Setaria italica
Seita.9G403000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46251750-46253749 Setaria italica
Seita.9G403000 2.0kb downstream 2.0kb downstream 4833 true scaffold_9: 46253750-46258582 Setaria italica
Seita.9G403000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46256583-46258582 Setaria italica
Seita.9G403000 5.0kb upstream 5.0kb upstream 7833 true scaffold_9: 46248750-46256582 Setaria italica
Seita.9G403000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46248750-46253749 Setaria italica
Seita.9G403000 5.0kb downstream 5.0kb downstream 7833 true scaffold_9: 46253750-46261582 Setaria italica
Seita.9G403000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46256583-46261582 Setaria italica
Seita.9G403000 10.0kb upstream 10.0kb upstream 12833 true scaffold_9: 46243750-46256582 Setaria italica
Seita.9G403000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46243750-46253749 Setaria italica
Seita.9G403000 10.0kb downstream 10.0kb downstream 12833 true scaffold_9: 46253750-46266582 Setaria italica
Seita.9G403000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46256583-46266582 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191312 5267 Panicoideae View MSA
124589600 5269 Grass View MSA
122042292 5273 Angiosperm View MSA
121349540 5274 Embryophyte View MSA
123424801 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.399     High  
cufflinks 89.274     High High
cufflinks 15.003     High Low
cufflinks 5.62       Low
cufflinks 13.955     High Low
cufflinks 96.946     High High
cufflinks 39.44     High  
cufflinks 50.207     High  
cufflinks 70.856     High  
cufflinks 28.203     High  
cufflinks 58.378     High  
cufflinks 48.041     High  
cufflinks 35.851     High  
cufflinks 28.627     High  
cufflinks 74.72     High  
cufflinks 20.828     High  
cufflinks 70.426     High  
cufflinks 21.126     High  
cufflinks 9.329       Low
cufflinks 75.898     High  

0 Strain