Gene : Seita.9G401800 S. italica v2.2
Genomic Order:  4018 Name:  ? Seita.9G401800
Secondary Identifier:  ? PAC:32693797
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G401800 0.5kb upstream 0.5kb upstream 4164 true scaffold_9: 46159231-46163394 Setaria italica
Seita.9G401800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46162895-46163394 Setaria italica
Seita.9G401800 0.5kb downstream 0.5kb downstream 4164 true scaffold_9: 46158731-46162894 Setaria italica
Seita.9G401800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46158731-46159230 Setaria italica
Seita.9G401800 1.0kb upstream 1.0kb upstream 4664 true scaffold_9: 46159231-46163894 Setaria italica
Seita.9G401800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46162895-46163894 Setaria italica
Seita.9G401800 1.0kb downstream 1.0kb downstream 4664 true scaffold_9: 46158231-46162894 Setaria italica
Seita.9G401800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46158231-46159230 Setaria italica
Seita.9G401800 2.0kb upstream 2.0kb upstream 5664 true scaffold_9: 46159231-46164894 Setaria italica
Seita.9G401800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46162895-46164894 Setaria italica
Seita.9G401800 2.0kb downstream 2.0kb downstream 5664 true scaffold_9: 46157231-46162894 Setaria italica
Seita.9G401800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46157231-46159230 Setaria italica
Seita.9G401800 5.0kb upstream 5.0kb upstream 8664 true scaffold_9: 46159231-46167894 Setaria italica
Seita.9G401800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46162895-46167894 Setaria italica
Seita.9G401800 5.0kb downstream 5.0kb downstream 8664 true scaffold_9: 46154231-46162894 Setaria italica
Seita.9G401800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46154231-46159230 Setaria italica
Seita.9G401800 10.0kb upstream 10.0kb upstream 13664 true scaffold_9: 46159231-46172894 Setaria italica
Seita.9G401800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46162895-46172894 Setaria italica
Seita.9G401800 10.0kb downstream 10.0kb downstream 13664 true scaffold_9: 46149231-46162894 Setaria italica
Seita.9G401800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46149231-46159230 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178553 5267 Panicoideae View MSA
124585677 5269 Grass View MSA
122042611 5273 Angiosperm View MSA
123429170 5275 Viridiplantae View MSA
121346689 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.346        
cufflinks 4.294        
cufflinks 0.844       Low
cufflinks 1.932        
cufflinks 4.901        
cufflinks 4.754        
cufflinks 2.973        
cufflinks 7.577       High
cufflinks 6.459       High
cufflinks 4.024        
cufflinks 3.124        
cufflinks 3.079        
cufflinks 3.945        
cufflinks 0.436       Low
cufflinks 4.178        
cufflinks 1.97        
cufflinks 4.743        
cufflinks 0.483       Low
cufflinks 1.056       Low
cufflinks 4.536        

0 Strain