Gene : Seita.9G404900 S. italica v2.2
Defline:  (1 of 1) PTHR11225 - NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN Genomic Order:  4049
Name:  ? Seita.9G404900 Secondary Identifier:  ? PAC:32688356
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G404900 0.5kb upstream 0.5kb upstream 7800 true scaffold_9: 46414805-46422604 Setaria italica
Seita.9G404900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46414805-46415304 Setaria italica
Seita.9G404900 0.5kb downstream 0.5kb downstream 7800 true scaffold_9: 46415305-46423104 Setaria italica
Seita.9G404900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46422605-46423104 Setaria italica
Seita.9G404900 1.0kb upstream 1.0kb upstream 8300 true scaffold_9: 46414305-46422604 Setaria italica
Seita.9G404900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46414305-46415304 Setaria italica
Seita.9G404900 1.0kb downstream 1.0kb downstream 8300 true scaffold_9: 46415305-46423604 Setaria italica
Seita.9G404900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46422605-46423604 Setaria italica
Seita.9G404900 2.0kb upstream 2.0kb upstream 9300 true scaffold_9: 46413305-46422604 Setaria italica
Seita.9G404900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46413305-46415304 Setaria italica
Seita.9G404900 2.0kb downstream 2.0kb downstream 9300 true scaffold_9: 46415305-46424604 Setaria italica
Seita.9G404900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46422605-46424604 Setaria italica
Seita.9G404900 5.0kb upstream 5.0kb upstream 12300 true scaffold_9: 46410305-46422604 Setaria italica
Seita.9G404900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46410305-46415304 Setaria italica
Seita.9G404900 5.0kb downstream 5.0kb downstream 12300 true scaffold_9: 46415305-46427604 Setaria italica
Seita.9G404900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46422605-46427604 Setaria italica
Seita.9G404900 10.0kb upstream 10.0kb upstream 17300 true scaffold_9: 46405305-46422604 Setaria italica
Seita.9G404900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46405305-46415304 Setaria italica
Seita.9G404900 10.0kb downstream 10.0kb downstream 17300 true scaffold_9: 46415305-46432604 Setaria italica
Seita.9G404900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46422605-46432604 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196299 5267 Panicoideae View MSA
124574172 5269 Grass View MSA
122043795 5273 Angiosperm View MSA
121346539 5274 Embryophyte View MSA
123424897 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.499     High High
cufflinks 15.565     High High
cufflinks 8.455        
cufflinks 7.288       Low
cufflinks 7.676       Low
cufflinks 16.233     High High
cufflinks 10.535        
cufflinks 9.088        
cufflinks 12.516     High  
cufflinks 10.375        
cufflinks 13.828     High  
cufflinks 12.482        
cufflinks 10.934        
cufflinks 8.28        
cufflinks 11.735        
cufflinks 12.055     High  
cufflinks 13.303        
cufflinks 16.563     High High
cufflinks 5.207       Low
cufflinks 13.295        

0 Strain