Gene : Seita.9G325000 S. italica v2.2
Defline:  (1 of 1) 3.4.24.23 - Matrilysin / Uterine metalloendopeptidase Genomic Order:  3250
Name:  ? Seita.9G325000 Secondary Identifier:  ? PAC:32691211
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G325000 0.5kb upstream 0.5kb upstream 1607 true scaffold_9: 37536882-37538488 Setaria italica
Seita.9G325000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 37536882-37537381 Setaria italica
Seita.9G325000 0.5kb downstream 0.5kb downstream 1607 true scaffold_9: 37537382-37538988 Setaria italica
Seita.9G325000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 37538489-37538988 Setaria italica
Seita.9G325000 1.0kb upstream 1.0kb upstream 2107 true scaffold_9: 37536382-37538488 Setaria italica
Seita.9G325000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 37536382-37537381 Setaria italica
Seita.9G325000 1.0kb downstream 1.0kb downstream 2107 true scaffold_9: 37537382-37539488 Setaria italica
Seita.9G325000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 37538489-37539488 Setaria italica
Seita.9G325000 2.0kb upstream 2.0kb upstream 3107 true scaffold_9: 37535382-37538488 Setaria italica
Seita.9G325000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 37535382-37537381 Setaria italica
Seita.9G325000 2.0kb downstream 2.0kb downstream 3107 true scaffold_9: 37537382-37540488 Setaria italica
Seita.9G325000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 37538489-37540488 Setaria italica
Seita.9G325000 5.0kb upstream 5.0kb upstream 6107 true scaffold_9: 37532382-37538488 Setaria italica
Seita.9G325000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 37532382-37537381 Setaria italica
Seita.9G325000 5.0kb downstream 5.0kb downstream 6107 true scaffold_9: 37537382-37543488 Setaria italica
Seita.9G325000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 37538489-37543488 Setaria italica
Seita.9G325000 10.0kb upstream 10.0kb upstream 11107 true scaffold_9: 37527382-37538488 Setaria italica
Seita.9G325000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 37527382-37537381 Setaria italica
Seita.9G325000 10.0kb downstream 10.0kb downstream 11107 true scaffold_9: 37537382-37548488 Setaria italica
Seita.9G325000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 37538489-37548488 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181155 5267 Panicoideae View MSA
124571344 5269 Grass View MSA
122041842 5273 Angiosperm View MSA
121350353 5274 Embryophyte View MSA
123381692 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.518        
cufflinks 0.433        
cufflinks 0.575        
cufflinks 0.223       Low
cufflinks 0.331       Low
cufflinks 0.278       Low
cufflinks 1.033        
cufflinks 0.643        
cufflinks 0.316       Low
cufflinks 1.702       High
cufflinks 0.476        
cufflinks 1.821       High
cufflinks 2.27       High
cufflinks 1.852       High
cufflinks 1.38        
cufflinks 0.93        
cufflinks 1.686       High
cufflinks 0.818        
cufflinks 0.829        
cufflinks 1.333        

0 Strain