Gene : Seita.9G328900 S. italica v2.2
Defline:  (1 of 1) PTHR10788:SF38 - TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED Genomic Order:  3289
Name:  ? Seita.9G328900 Secondary Identifier:  ? PAC:32692336
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G328900 0.5kb upstream 0.5kb upstream 4812 true scaffold_9: 38423846-38428657 Setaria italica
Seita.9G328900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 38423846-38424345 Setaria italica
Seita.9G328900 0.5kb downstream 0.5kb downstream 4812 true scaffold_9: 38424346-38429157 Setaria italica
Seita.9G328900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 38428658-38429157 Setaria italica
Seita.9G328900 1.0kb upstream 1.0kb upstream 5312 true scaffold_9: 38423346-38428657 Setaria italica
Seita.9G328900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 38423346-38424345 Setaria italica
Seita.9G328900 1.0kb downstream 1.0kb downstream 5312 true scaffold_9: 38424346-38429657 Setaria italica
Seita.9G328900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 38428658-38429657 Setaria italica
Seita.9G328900 2.0kb upstream 2.0kb upstream 6312 true scaffold_9: 38422346-38428657 Setaria italica
Seita.9G328900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 38422346-38424345 Setaria italica
Seita.9G328900 2.0kb downstream 2.0kb downstream 6312 true scaffold_9: 38424346-38430657 Setaria italica
Seita.9G328900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 38428658-38430657 Setaria italica
Seita.9G328900 5.0kb upstream 5.0kb upstream 9312 true scaffold_9: 38419346-38428657 Setaria italica
Seita.9G328900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 38419346-38424345 Setaria italica
Seita.9G328900 5.0kb downstream 5.0kb downstream 9312 true scaffold_9: 38424346-38433657 Setaria italica
Seita.9G328900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 38428658-38433657 Setaria italica
Seita.9G328900 10.0kb upstream 10.0kb upstream 14312 true scaffold_9: 38414346-38428657 Setaria italica
Seita.9G328900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 38414346-38424345 Setaria italica
Seita.9G328900 10.0kb downstream 10.0kb downstream 14312 true scaffold_9: 38424346-38438657 Setaria italica
Seita.9G328900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 38428658-38438657 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182914 5267 Panicoideae View MSA
124575666 5269 Grass View MSA
122044363 5273 Angiosperm View MSA
121351669 5274 Embryophyte View MSA
123427869 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.734       Low
cufflinks 4.17        
cufflinks 0.316       Low
cufflinks 0.453       Low
cufflinks 0.638       Low
cufflinks 4.72        
cufflinks 1.722        
cufflinks 2.58        
cufflinks 2.799        
cufflinks 3.524        
cufflinks 5.289        
cufflinks 41.543     High High
cufflinks 14.174     High High
cufflinks 0.552       Low
cufflinks 10.285        
cufflinks 1.328        
cufflinks 10.806        
cufflinks 31.342     High High
cufflinks 1.021        
cufflinks 12.156        

0 Strain