Gene : Seita.9G333900 S. italica v2.2
Defline:  (1 of 4) PF12043 - Domain of unknown function (DUF3527) (DUF3527) Genomic Order:  3339
Name:  ? Seita.9G333900 Secondary Identifier:  ? PAC:32687276
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G333900 0.5kb upstream 0.5kb upstream 4448 true scaffold_9: 39213511-39217958 Setaria italica
Seita.9G333900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 39213511-39214010 Setaria italica
Seita.9G333900 0.5kb downstream 0.5kb downstream 4448 true scaffold_9: 39214011-39218458 Setaria italica
Seita.9G333900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 39217959-39218458 Setaria italica
Seita.9G333900 1.0kb upstream 1.0kb upstream 4948 true scaffold_9: 39213011-39217958 Setaria italica
Seita.9G333900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 39213011-39214010 Setaria italica
Seita.9G333900 1.0kb downstream 1.0kb downstream 4948 true scaffold_9: 39214011-39218958 Setaria italica
Seita.9G333900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 39217959-39218958 Setaria italica
Seita.9G333900 2.0kb upstream 2.0kb upstream 5948 true scaffold_9: 39212011-39217958 Setaria italica
Seita.9G333900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 39212011-39214010 Setaria italica
Seita.9G333900 2.0kb downstream 2.0kb downstream 5948 true scaffold_9: 39214011-39219958 Setaria italica
Seita.9G333900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 39217959-39219958 Setaria italica
Seita.9G333900 5.0kb upstream 5.0kb upstream 8948 true scaffold_9: 39209011-39217958 Setaria italica
Seita.9G333900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 39209011-39214010 Setaria italica
Seita.9G333900 5.0kb downstream 5.0kb downstream 8948 true scaffold_9: 39214011-39222958 Setaria italica
Seita.9G333900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 39217959-39222958 Setaria italica
Seita.9G333900 10.0kb upstream 10.0kb upstream 13948 true scaffold_9: 39204011-39217958 Setaria italica
Seita.9G333900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 39204011-39214010 Setaria italica
Seita.9G333900 10.0kb downstream 10.0kb downstream 13948 true scaffold_9: 39214011-39227958 Setaria italica
Seita.9G333900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 39217959-39227958 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179435 5267 Panicoideae View MSA
124581419 5269 Grass View MSA
122047262 5273 Angiosperm View MSA
121310717 5274 Embryophyte View MSA
123348134 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.419        
cufflinks 3.076        
cufflinks 0.074     Low Low
cufflinks 0.073     Low Low
cufflinks 0.28        
cufflinks 2.765        
cufflinks 1.521        
cufflinks 1.81        
cufflinks 1.704        
cufflinks 1.726        
cufflinks 2.471        
cufflinks 2.14        
cufflinks 2.064        
cufflinks 0.05     Low Low
cufflinks 2.694        
cufflinks 0.699        
cufflinks 2.247        
cufflinks 0.515        
cufflinks 0.039     Low Low
cufflinks 2.452        

0 Strain