Gene : Seita.9G334700 S. italica v2.2
Defline:  (1 of 1) PTHR15704 - SUPERKILLER 3 PROTEIN-RELATED Genomic Order:  3347
Name:  ? Seita.9G334700 Secondary Identifier:  ? PAC:32689068
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G334700 0.5kb upstream 0.5kb upstream 7916 true scaffold_9: 39275211-39283126 Setaria italica
Seita.9G334700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 39275211-39275710 Setaria italica
Seita.9G334700 0.5kb downstream 0.5kb downstream 7916 true scaffold_9: 39275711-39283626 Setaria italica
Seita.9G334700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 39283127-39283626 Setaria italica
Seita.9G334700 1.0kb upstream 1.0kb upstream 8416 true scaffold_9: 39274711-39283126 Setaria italica
Seita.9G334700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 39274711-39275710 Setaria italica
Seita.9G334700 1.0kb downstream 1.0kb downstream 8416 true scaffold_9: 39275711-39284126 Setaria italica
Seita.9G334700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 39283127-39284126 Setaria italica
Seita.9G334700 2.0kb upstream 2.0kb upstream 9416 true scaffold_9: 39273711-39283126 Setaria italica
Seita.9G334700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 39273711-39275710 Setaria italica
Seita.9G334700 2.0kb downstream 2.0kb downstream 9416 true scaffold_9: 39275711-39285126 Setaria italica
Seita.9G334700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 39283127-39285126 Setaria italica
Seita.9G334700 5.0kb upstream 5.0kb upstream 12416 true scaffold_9: 39270711-39283126 Setaria italica
Seita.9G334700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 39270711-39275710 Setaria italica
Seita.9G334700 5.0kb downstream 5.0kb downstream 12416 true scaffold_9: 39275711-39288126 Setaria italica
Seita.9G334700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 39283127-39288126 Setaria italica
Seita.9G334700 10.0kb upstream 10.0kb upstream 17416 true scaffold_9: 39265711-39283126 Setaria italica
Seita.9G334700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 39265711-39275710 Setaria italica
Seita.9G334700 10.0kb downstream 10.0kb downstream 17416 true scaffold_9: 39275711-39293126 Setaria italica
Seita.9G334700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 39283127-39293126 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186062 5267 Panicoideae View MSA
124582618 5269 Grass View MSA
122046967 5273 Angiosperm View MSA
121344761 5274 Embryophyte View MSA
123425993 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.943       High
cufflinks 10.313       High
cufflinks 5.222        
cufflinks 4.35       Low
cufflinks 3.724       Low
cufflinks 11.09       High
cufflinks 8.094        
cufflinks 5.667        
cufflinks 5.668        
cufflinks 5.533        
cufflinks 8.758        
cufflinks 5.312        
cufflinks 6.589        
cufflinks 4.483       Low
cufflinks 6.361        
cufflinks 10.617       High
cufflinks 5.641        
cufflinks 11.872     High High
cufflinks 3.36       Low
cufflinks 6.809        

0 Strain