Gene : Seita.9G337600 S. italica v2.2
Defline:  (1 of 1) PF12646 - Domain of unknown function (DUF3783) (DUF3783) Genomic Order:  3376
Name:  ? Seita.9G337600 Secondary Identifier:  ? PAC:32689278
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5390 Setaria italica pathologic  
Sitalica PWY-7055 Setaria italica pathologic  
Sitalica PWY-7140 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G337600 0.5kb upstream 0.5kb upstream 3254 true scaffold_9: 39581084-39584337 Setaria italica
Seita.9G337600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 39583838-39584337 Setaria italica
Seita.9G337600 0.5kb downstream 0.5kb downstream 3254 true scaffold_9: 39580584-39583837 Setaria italica
Seita.9G337600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 39580584-39581083 Setaria italica
Seita.9G337600 1.0kb upstream 1.0kb upstream 3754 true scaffold_9: 39581084-39584837 Setaria italica
Seita.9G337600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 39583838-39584837 Setaria italica
Seita.9G337600 1.0kb downstream 1.0kb downstream 3754 true scaffold_9: 39580084-39583837 Setaria italica
Seita.9G337600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 39580084-39581083 Setaria italica
Seita.9G337600 2.0kb upstream 2.0kb upstream 4754 true scaffold_9: 39581084-39585837 Setaria italica
Seita.9G337600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 39583838-39585837 Setaria italica
Seita.9G337600 2.0kb downstream 2.0kb downstream 4754 true scaffold_9: 39579084-39583837 Setaria italica
Seita.9G337600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 39579084-39581083 Setaria italica
Seita.9G337600 5.0kb upstream 5.0kb upstream 7754 true scaffold_9: 39581084-39588837 Setaria italica
Seita.9G337600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 39583838-39588837 Setaria italica
Seita.9G337600 5.0kb downstream 5.0kb downstream 7754 true scaffold_9: 39576084-39583837 Setaria italica
Seita.9G337600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 39576084-39581083 Setaria italica
Seita.9G337600 10.0kb upstream 10.0kb upstream 12754 true scaffold_9: 39581084-39593837 Setaria italica
Seita.9G337600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 39583838-39593837 Setaria italica
Seita.9G337600 10.0kb downstream 10.0kb downstream 12754 true scaffold_9: 39571084-39583837 Setaria italica
Seita.9G337600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 39571084-39581083 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026510 5273 Angiosperm View MSA
122192619 5267 Panicoideae View MSA
124585466 5269 Grass View MSA
121351055 5274 Embryophyte View MSA
123425150 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.523        
cufflinks 1.944        
cufflinks 1.602        
cufflinks 1.093        
cufflinks 2.439        
cufflinks 1.917        
cufflinks 4.085       High
cufflinks 6.401       High
cufflinks 5.276       High
cufflinks 0.858        
cufflinks 1.034        
cufflinks 0.309       Low
cufflinks 0.18       Low
cufflinks 2.175        
cufflinks 0.374       Low
cufflinks 3.77       High
cufflinks 0.584        
cufflinks 0.766        
cufflinks 2.442        
cufflinks 0.18       Low

0 Strain