Gene : Seita.9G339700 S. italica v2.2
Defline:  (1 of 2) PTHR10677 - UBIQUILIN Genomic Order:  3397
Name:  ? Seita.9G339700 Secondary Identifier:  ? PAC:32690293
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G339700 0.5kb upstream 0.5kb upstream 5451 true scaffold_9: 40001577-40007027 Setaria italica
Seita.9G339700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 40001577-40002076 Setaria italica
Seita.9G339700 0.5kb downstream 0.5kb downstream 5451 true scaffold_9: 40002077-40007527 Setaria italica
Seita.9G339700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 40007028-40007527 Setaria italica
Seita.9G339700 1.0kb upstream 1.0kb upstream 5951 true scaffold_9: 40001077-40007027 Setaria italica
Seita.9G339700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 40001077-40002076 Setaria italica
Seita.9G339700 1.0kb downstream 1.0kb downstream 5951 true scaffold_9: 40002077-40008027 Setaria italica
Seita.9G339700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 40007028-40008027 Setaria italica
Seita.9G339700 2.0kb upstream 2.0kb upstream 6951 true scaffold_9: 40000077-40007027 Setaria italica
Seita.9G339700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 40000077-40002076 Setaria italica
Seita.9G339700 2.0kb downstream 2.0kb downstream 6951 true scaffold_9: 40002077-40009027 Setaria italica
Seita.9G339700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 40007028-40009027 Setaria italica
Seita.9G339700 5.0kb upstream 5.0kb upstream 9951 true scaffold_9: 39997077-40007027 Setaria italica
Seita.9G339700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 39997077-40002076 Setaria italica
Seita.9G339700 5.0kb downstream 5.0kb downstream 9951 true scaffold_9: 40002077-40012027 Setaria italica
Seita.9G339700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 40007028-40012027 Setaria italica
Seita.9G339700 10.0kb upstream 10.0kb upstream 14951 true scaffold_9: 39992077-40007027 Setaria italica
Seita.9G339700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 39992077-40002076 Setaria italica
Seita.9G339700 10.0kb downstream 10.0kb downstream 14951 true scaffold_9: 40002077-40017027 Setaria italica
Seita.9G339700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 40007028-40017027 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176237 5267 Panicoideae View MSA
124575069 5269 Grass View MSA
122045847 5273 Angiosperm View MSA
121343962 5274 Embryophyte View MSA
123426424 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.98     High  
cufflinks 24.039     High Low
cufflinks 24.177     High Low
cufflinks 26.652     High  
cufflinks 27.637     High  
cufflinks 23.645     High Low
cufflinks 28.084     High  
cufflinks 22.788     High Low
cufflinks 28.935     High  
cufflinks 26.298     High  
cufflinks 36.011     High  
cufflinks 43.22     High High
cufflinks 37.306     High  
cufflinks 28.523     High  
cufflinks 38.779     High High
cufflinks 25.479     High  
cufflinks 35.642     High  
cufflinks 42.591     High High
cufflinks 31.125     High  
cufflinks 40.72     High High

0 Strain