Gene : Seita.9G344400 S. italica v2.2
Defline:  (1 of 3) PF11947 - Protein of unknown function (DUF3464) (DUF3464) Genomic Order:  3444
Name:  ? Seita.9G344400 Secondary Identifier:  ? PAC:32690434
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G344400 0.5kb upstream 0.5kb upstream 1193 true scaffold_9: 40446542-40447734 Setaria italica
Seita.9G344400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 40446542-40447041 Setaria italica
Seita.9G344400 0.5kb downstream 0.5kb downstream 1193 true scaffold_9: 40447042-40448234 Setaria italica
Seita.9G344400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 40447735-40448234 Setaria italica
Seita.9G344400 1.0kb upstream 1.0kb upstream 1693 true scaffold_9: 40446042-40447734 Setaria italica
Seita.9G344400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 40446042-40447041 Setaria italica
Seita.9G344400 1.0kb downstream 1.0kb downstream 1693 true scaffold_9: 40447042-40448734 Setaria italica
Seita.9G344400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 40447735-40448734 Setaria italica
Seita.9G344400 2.0kb upstream 2.0kb upstream 2693 true scaffold_9: 40445042-40447734 Setaria italica
Seita.9G344400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 40445042-40447041 Setaria italica
Seita.9G344400 2.0kb downstream 2.0kb downstream 2693 true scaffold_9: 40447042-40449734 Setaria italica
Seita.9G344400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 40447735-40449734 Setaria italica
Seita.9G344400 5.0kb upstream 5.0kb upstream 5693 true scaffold_9: 40442042-40447734 Setaria italica
Seita.9G344400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 40442042-40447041 Setaria italica
Seita.9G344400 5.0kb downstream 5.0kb downstream 5693 true scaffold_9: 40447042-40452734 Setaria italica
Seita.9G344400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 40447735-40452734 Setaria italica
Seita.9G344400 10.0kb upstream 10.0kb upstream 10693 true scaffold_9: 40437042-40447734 Setaria italica
Seita.9G344400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 40437042-40447041 Setaria italica
Seita.9G344400 10.0kb downstream 10.0kb downstream 10693 true scaffold_9: 40447042-40457734 Setaria italica
Seita.9G344400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 40447735-40457734 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185116 5267 Panicoideae View MSA
124577322 5269 Grass View MSA
122046649 5273 Angiosperm View MSA
121348094 5274 Embryophyte View MSA
123428537 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.632        
cufflinks 18.314     High  
cufflinks 43.716     High  
cufflinks 52.7     High  
cufflinks 60.282     High  
cufflinks 18.348     High  
cufflinks 51.052     High  
cufflinks 44.102     High  
cufflinks 53.857     High  
cufflinks 24.07     High  
cufflinks 9.897        
cufflinks 0.41       Low
cufflinks 2.372        
cufflinks 111.619     High High
cufflinks 0.529       Low
cufflinks 50.585     High  
cufflinks 0.977       Low
cufflinks 14.872     High  
cufflinks 13.091     High  
cufflinks 0.939       Low

0 Strain