Gene : Seita.9G350300 S. italica v2.2
Defline:  (1 of 3) PTHR12428//PTHR12428:SF21 - OXA1 Genomic Order:  3503
Name:  ? Seita.9G350300 Secondary Identifier:  ? PAC:32686838
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G350300 0.5kb upstream 0.5kb upstream 5990 true scaffold_9: 41031510-41037499 Setaria italica
Seita.9G350300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 41037000-41037499 Setaria italica
Seita.9G350300 0.5kb downstream 0.5kb downstream 5990 true scaffold_9: 41031010-41036999 Setaria italica
Seita.9G350300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 41031010-41031509 Setaria italica
Seita.9G350300 1.0kb upstream 1.0kb upstream 6490 true scaffold_9: 41031510-41037999 Setaria italica
Seita.9G350300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 41037000-41037999 Setaria italica
Seita.9G350300 1.0kb downstream 1.0kb downstream 6490 true scaffold_9: 41030510-41036999 Setaria italica
Seita.9G350300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 41030510-41031509 Setaria italica
Seita.9G350300 2.0kb upstream 2.0kb upstream 7490 true scaffold_9: 41031510-41038999 Setaria italica
Seita.9G350300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 41037000-41038999 Setaria italica
Seita.9G350300 2.0kb downstream 2.0kb downstream 7490 true scaffold_9: 41029510-41036999 Setaria italica
Seita.9G350300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 41029510-41031509 Setaria italica
Seita.9G350300 5.0kb upstream 5.0kb upstream 10490 true scaffold_9: 41031510-41041999 Setaria italica
Seita.9G350300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 41037000-41041999 Setaria italica
Seita.9G350300 5.0kb downstream 5.0kb downstream 10490 true scaffold_9: 41026510-41036999 Setaria italica
Seita.9G350300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 41026510-41031509 Setaria italica
Seita.9G350300 10.0kb upstream 10.0kb upstream 15490 true scaffold_9: 41031510-41046999 Setaria italica
Seita.9G350300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 41037000-41046999 Setaria italica
Seita.9G350300 10.0kb downstream 10.0kb downstream 15490 true scaffold_9: 41021510-41036999 Setaria italica
Seita.9G350300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 41021510-41031509 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189684 5267 Panicoideae View MSA
124579547 5269 Grass View MSA
122051610 5273 Angiosperm View MSA
121347323 5274 Embryophyte View MSA
123428331 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.332        
cufflinks 2.876        
cufflinks 1.958        
cufflinks 1.383       Low
cufflinks 1.62       Low
cufflinks 3.122        
cufflinks 2.251        
cufflinks 4.029       High
cufflinks 2.695        
cufflinks 3.252        
cufflinks 2.492        
cufflinks 2.915        
cufflinks 1.642       Low
cufflinks 2.358        
cufflinks 3.424        
cufflinks 2.018        
cufflinks 4.171       High
cufflinks 1.836        
cufflinks 1.792        
cufflinks 3.987       High

0 Strain