Gene : Seita.9G353100 S. italica v2.2
Defline:  (1 of 2) PF10225 - Uncharacterized conserved protein (DUF2215) (DUF2215) Genomic Order:  3531
Name:  ? Seita.9G353100 Secondary Identifier:  ? PAC:32691771
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G353100 0.5kb upstream 0.5kb upstream 6090 true scaffold_9: 41265294-41271383 Setaria italica
Seita.9G353100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 41265294-41265793 Setaria italica
Seita.9G353100 0.5kb downstream 0.5kb downstream 6090 true scaffold_9: 41265794-41271883 Setaria italica
Seita.9G353100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 41271384-41271883 Setaria italica
Seita.9G353100 1.0kb upstream 1.0kb upstream 6590 true scaffold_9: 41264794-41271383 Setaria italica
Seita.9G353100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 41264794-41265793 Setaria italica
Seita.9G353100 1.0kb downstream 1.0kb downstream 6590 true scaffold_9: 41265794-41272383 Setaria italica
Seita.9G353100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 41271384-41272383 Setaria italica
Seita.9G353100 2.0kb upstream 2.0kb upstream 7590 true scaffold_9: 41263794-41271383 Setaria italica
Seita.9G353100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 41263794-41265793 Setaria italica
Seita.9G353100 2.0kb downstream 2.0kb downstream 7590 true scaffold_9: 41265794-41273383 Setaria italica
Seita.9G353100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 41271384-41273383 Setaria italica
Seita.9G353100 5.0kb upstream 5.0kb upstream 10590 true scaffold_9: 41260794-41271383 Setaria italica
Seita.9G353100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 41260794-41265793 Setaria italica
Seita.9G353100 5.0kb downstream 5.0kb downstream 10590 true scaffold_9: 41265794-41276383 Setaria italica
Seita.9G353100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 41271384-41276383 Setaria italica
Seita.9G353100 10.0kb upstream 10.0kb upstream 15590 true scaffold_9: 41255794-41271383 Setaria italica
Seita.9G353100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 41255794-41265793 Setaria italica
Seita.9G353100 10.0kb downstream 10.0kb downstream 15590 true scaffold_9: 41265794-41281383 Setaria italica
Seita.9G353100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 41271384-41281383 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175599 5267 Panicoideae View MSA
124579470 5269 Grass View MSA
122042001 5273 Angiosperm View MSA
121348772 5274 Embryophyte View MSA
123381008 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.84        
cufflinks 1.968        
cufflinks 0.886       Low
cufflinks 0.731       Low
cufflinks 0.789       Low
cufflinks 1.659        
cufflinks 1.533        
cufflinks 1.286        
cufflinks 1.182        
cufflinks 1.781        
cufflinks 1.663        
cufflinks 2.133       High
cufflinks 0.853       Low
cufflinks 1.19        
cufflinks 1.26        
cufflinks 1.89        
cufflinks 1.369        
cufflinks 3.043       High
cufflinks 1.137        
cufflinks 1.404        

0 Strain