Gene : Seita.9G358700 S. italica v2.2
Defline:  (1 of 8) PF04788 - Protein of unknown function (DUF620) (DUF620) Genomic Order:  3587
Name:  ? Seita.9G358700 Secondary Identifier:  ? PAC:32690301
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G358700 0.5kb upstream 0.5kb upstream 2678 true scaffold_9: 41866977-41869654 Setaria italica
Seita.9G358700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 41869155-41869654 Setaria italica
Seita.9G358700 0.5kb downstream 0.5kb downstream 2678 true scaffold_9: 41866477-41869154 Setaria italica
Seita.9G358700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 41866477-41866976 Setaria italica
Seita.9G358700 1.0kb upstream 1.0kb upstream 3178 true scaffold_9: 41866977-41870154 Setaria italica
Seita.9G358700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 41869155-41870154 Setaria italica
Seita.9G358700 1.0kb downstream 1.0kb downstream 3178 true scaffold_9: 41865977-41869154 Setaria italica
Seita.9G358700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 41865977-41866976 Setaria italica
Seita.9G358700 2.0kb upstream 2.0kb upstream 4178 true scaffold_9: 41866977-41871154 Setaria italica
Seita.9G358700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 41869155-41871154 Setaria italica
Seita.9G358700 2.0kb downstream 2.0kb downstream 4178 true scaffold_9: 41864977-41869154 Setaria italica
Seita.9G358700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 41864977-41866976 Setaria italica
Seita.9G358700 5.0kb upstream 5.0kb upstream 7178 true scaffold_9: 41866977-41874154 Setaria italica
Seita.9G358700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 41869155-41874154 Setaria italica
Seita.9G358700 5.0kb downstream 5.0kb downstream 7178 true scaffold_9: 41861977-41869154 Setaria italica
Seita.9G358700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 41861977-41866976 Setaria italica
Seita.9G358700 10.0kb upstream 10.0kb upstream 12178 true scaffold_9: 41866977-41879154 Setaria italica
Seita.9G358700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 41869155-41879154 Setaria italica
Seita.9G358700 10.0kb downstream 10.0kb downstream 12178 true scaffold_9: 41856977-41869154 Setaria italica
Seita.9G358700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 41856977-41866976 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187049 5267 Panicoideae View MSA
124465904 5269 Grass View MSA
122043427 5273 Angiosperm View MSA
121310121 5274 Embryophyte View MSA
123347696 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.383        
cufflinks 2.506        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low Low
cufflinks 0.016     Low Low
cufflinks 3.307       High
cufflinks 1.355        
cufflinks 1.392        
cufflinks 1.367        
cufflinks 3.168       High
cufflinks 1.085        
cufflinks 0.581        
cufflinks 0.522        
cufflinks 0.055     Low Low
cufflinks 1.195        
cufflinks 0.257        
cufflinks 1.093        
cufflinks 0.088     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.311        

0 Strain