Gene : Seita.9G360800 S. italica v2.2
Defline:  (1 of 1) PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Genomic Order:  3608
Name:  ? Seita.9G360800 Secondary Identifier:  ? PAC:32689601
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G360800 0.5kb upstream 0.5kb upstream 7027 true scaffold_9: 42170809-42177835 Setaria italica
Seita.9G360800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 42177336-42177835 Setaria italica
Seita.9G360800 0.5kb downstream 0.5kb downstream 7027 true scaffold_9: 42170309-42177335 Setaria italica
Seita.9G360800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 42170309-42170808 Setaria italica
Seita.9G360800 1.0kb upstream 1.0kb upstream 7527 true scaffold_9: 42170809-42178335 Setaria italica
Seita.9G360800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 42177336-42178335 Setaria italica
Seita.9G360800 1.0kb downstream 1.0kb downstream 7527 true scaffold_9: 42169809-42177335 Setaria italica
Seita.9G360800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 42169809-42170808 Setaria italica
Seita.9G360800 2.0kb upstream 2.0kb upstream 8527 true scaffold_9: 42170809-42179335 Setaria italica
Seita.9G360800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 42177336-42179335 Setaria italica
Seita.9G360800 2.0kb downstream 2.0kb downstream 8527 true scaffold_9: 42168809-42177335 Setaria italica
Seita.9G360800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 42168809-42170808 Setaria italica
Seita.9G360800 5.0kb upstream 5.0kb upstream 11527 true scaffold_9: 42170809-42182335 Setaria italica
Seita.9G360800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 42177336-42182335 Setaria italica
Seita.9G360800 5.0kb downstream 5.0kb downstream 11527 true scaffold_9: 42165809-42177335 Setaria italica
Seita.9G360800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 42165809-42170808 Setaria italica
Seita.9G360800 10.0kb upstream 10.0kb upstream 16527 true scaffold_9: 42170809-42187335 Setaria italica
Seita.9G360800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 42177336-42187335 Setaria italica
Seita.9G360800 10.0kb downstream 10.0kb downstream 16527 true scaffold_9: 42160809-42177335 Setaria italica
Seita.9G360800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 42160809-42170808 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196633 5267 Panicoideae View MSA
124588188 5269 Grass View MSA
122044164 5273 Angiosperm View MSA
121345857 5274 Embryophyte View MSA
123426722 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.575     High  
cufflinks 15.268     High  
cufflinks 22.452     High  
cufflinks 17.289     High  
cufflinks 23.991     High  
cufflinks 14.118     High  
cufflinks 30.918     High High
cufflinks 17.182     High  
cufflinks 32.99     High High
cufflinks 5.759       Low
cufflinks 12.884        
cufflinks 9.17        
cufflinks 8.658       Low
cufflinks 19.006     High  
cufflinks 8.004       Low
cufflinks 40.694     High High
cufflinks 7.287       Low
cufflinks 28.992     High High
cufflinks 25.174     High  
cufflinks 8.223       Low

0 Strain