Gene : Seita.9G362700 S. italica v2.2
Defline:  (1 of 3) PF16136 - Putative nuclear localisation signal (NINJA_B) Genomic Order:  3627
Name:  ? Seita.9G362700 Secondary Identifier:  ? PAC:32687795
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G362700 0.5kb upstream 0.5kb upstream 4036 true scaffold_9: 42341543-42345578 Setaria italica
Seita.9G362700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 42341543-42342042 Setaria italica
Seita.9G362700 0.5kb downstream 0.5kb downstream 4036 true scaffold_9: 42342043-42346078 Setaria italica
Seita.9G362700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 42345579-42346078 Setaria italica
Seita.9G362700 1.0kb upstream 1.0kb upstream 4536 true scaffold_9: 42341043-42345578 Setaria italica
Seita.9G362700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 42341043-42342042 Setaria italica
Seita.9G362700 1.0kb downstream 1.0kb downstream 4536 true scaffold_9: 42342043-42346578 Setaria italica
Seita.9G362700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 42345579-42346578 Setaria italica
Seita.9G362700 2.0kb upstream 2.0kb upstream 5536 true scaffold_9: 42340043-42345578 Setaria italica
Seita.9G362700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 42340043-42342042 Setaria italica
Seita.9G362700 2.0kb downstream 2.0kb downstream 5536 true scaffold_9: 42342043-42347578 Setaria italica
Seita.9G362700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 42345579-42347578 Setaria italica
Seita.9G362700 5.0kb upstream 5.0kb upstream 8536 true scaffold_9: 42337043-42345578 Setaria italica
Seita.9G362700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 42337043-42342042 Setaria italica
Seita.9G362700 5.0kb downstream 5.0kb downstream 8536 true scaffold_9: 42342043-42350578 Setaria italica
Seita.9G362700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 42345579-42350578 Setaria italica
Seita.9G362700 10.0kb upstream 10.0kb upstream 13536 true scaffold_9: 42332043-42345578 Setaria italica
Seita.9G362700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 42332043-42342042 Setaria italica
Seita.9G362700 10.0kb downstream 10.0kb downstream 13536 true scaffold_9: 42342043-42355578 Setaria italica
Seita.9G362700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 42345579-42355578 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187233 5267 Panicoideae View MSA
124587117 5269 Grass View MSA
122050177 5273 Angiosperm View MSA
121311781 5274 Embryophyte View MSA
123349031 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.766     High  
cufflinks 5.252       Low
cufflinks 27.572     High High
cufflinks 32.149     High High
cufflinks 29.038     High High
cufflinks 7.664       Low
cufflinks 10.29        
cufflinks 16.344     High  
cufflinks 15.139     High  
cufflinks 15.08        
cufflinks 10.113        
cufflinks 23.432     High  
cufflinks 24.446     High  
cufflinks 11.734        
cufflinks 7.408       Low
cufflinks 14.977     High  
cufflinks 17.6     High  
cufflinks 28.045     High High
cufflinks 20.511     High  
cufflinks 12.969        

0 Strain