Gene : Seita.9G444700 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  4447
Name:  ? Seita.9G444700 Secondary Identifier:  ? PAC:32692014
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G444700 0.5kb upstream 0.5kb upstream 6304 true scaffold_9: 49481350-49487653 Setaria italica
Seita.9G444700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 49481350-49481849 Setaria italica
Seita.9G444700 0.5kb downstream 0.5kb downstream 6304 true scaffold_9: 49481850-49488153 Setaria italica
Seita.9G444700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 49487654-49488153 Setaria italica
Seita.9G444700 1.0kb upstream 1.0kb upstream 6804 true scaffold_9: 49480850-49487653 Setaria italica
Seita.9G444700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 49480850-49481849 Setaria italica
Seita.9G444700 1.0kb downstream 1.0kb downstream 6804 true scaffold_9: 49481850-49488653 Setaria italica
Seita.9G444700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 49487654-49488653 Setaria italica
Seita.9G444700 2.0kb upstream 2.0kb upstream 7804 true scaffold_9: 49479850-49487653 Setaria italica
Seita.9G444700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 49479850-49481849 Setaria italica
Seita.9G444700 2.0kb downstream 2.0kb downstream 7804 true scaffold_9: 49481850-49489653 Setaria italica
Seita.9G444700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 49487654-49489653 Setaria italica
Seita.9G444700 5.0kb upstream 5.0kb upstream 10804 true scaffold_9: 49476850-49487653 Setaria italica
Seita.9G444700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 49476850-49481849 Setaria italica
Seita.9G444700 5.0kb downstream 5.0kb downstream 10804 true scaffold_9: 49481850-49492653 Setaria italica
Seita.9G444700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 49487654-49492653 Setaria italica
Seita.9G444700 10.0kb upstream 10.0kb upstream 15804 true scaffold_9: 49471850-49487653 Setaria italica
Seita.9G444700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 49471850-49481849 Setaria italica
Seita.9G444700 10.0kb downstream 10.0kb downstream 15804 true scaffold_9: 49481850-49497653 Setaria italica
Seita.9G444700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 49487654-49497653 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180236 5267 Panicoideae View MSA
124571137 5269 Grass View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.565        
cufflinks 5.932        
cufflinks 11.77     High  
cufflinks 8.693        
cufflinks 10.851     High  
cufflinks 5.57        
cufflinks 10.802        
cufflinks 9.947        
cufflinks 16.059     High High
cufflinks 1.389        
cufflinks 2.843        
cufflinks 0.785       Low
cufflinks 0.733       Low
cufflinks 5.823        
cufflinks 0.771       Low
cufflinks 20.05     High High
cufflinks 0.896       Low
cufflinks 6.575        
cufflinks 7.109        
cufflinks 0.73       Low

0 Strain