Gene : Seita.9G447100 S. italica v2.2
Defline:  (1 of 1) PTHR14154:SF15 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, PUTATIVE-RELATED Genomic Order:  4471
Name:  ? Seita.9G447100 Secondary Identifier:  ? PAC:32693152
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G447100 0.5kb upstream 0.5kb upstream 1097 true scaffold_9: 49622219-49623315 Setaria italica
Seita.9G447100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 49622816-49623315 Setaria italica
Seita.9G447100 0.5kb downstream 0.5kb downstream 1097 true scaffold_9: 49621719-49622815 Setaria italica
Seita.9G447100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 49621719-49622218 Setaria italica
Seita.9G447100 1.0kb upstream 1.0kb upstream 1597 true scaffold_9: 49622219-49623815 Setaria italica
Seita.9G447100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 49622816-49623815 Setaria italica
Seita.9G447100 1.0kb downstream 1.0kb downstream 1597 true scaffold_9: 49621219-49622815 Setaria italica
Seita.9G447100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 49621219-49622218 Setaria italica
Seita.9G447100 2.0kb upstream 2.0kb upstream 2597 true scaffold_9: 49622219-49624815 Setaria italica
Seita.9G447100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 49622816-49624815 Setaria italica
Seita.9G447100 2.0kb downstream 2.0kb downstream 2597 true scaffold_9: 49620219-49622815 Setaria italica
Seita.9G447100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 49620219-49622218 Setaria italica
Seita.9G447100 5.0kb upstream 5.0kb upstream 5597 true scaffold_9: 49622219-49627815 Setaria italica
Seita.9G447100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 49622816-49627815 Setaria italica
Seita.9G447100 5.0kb downstream 5.0kb downstream 5597 true scaffold_9: 49617219-49622815 Setaria italica
Seita.9G447100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 49617219-49622218 Setaria italica
Seita.9G447100 10.0kb upstream 10.0kb upstream 10597 true scaffold_9: 49622219-49632815 Setaria italica
Seita.9G447100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 49622816-49632815 Setaria italica
Seita.9G447100 10.0kb downstream 10.0kb downstream 10597 true scaffold_9: 49612219-49622815 Setaria italica
Seita.9G447100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 49612219-49622218 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179451 5267 Panicoideae View MSA
124584742 5269 Grass View MSA
122042573 5273 Angiosperm View MSA
121347139 5274 Embryophyte View MSA
123380499 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.124        
cufflinks 2.328        
cufflinks 5.122        
cufflinks 12.624     High High
cufflinks 10.513        
cufflinks 2.214        
cufflinks 8.49        
cufflinks 9.958        
cufflinks 10.086        
cufflinks 12.415       High
cufflinks 1.728        
cufflinks 3.16        
cufflinks 1.959        
cufflinks 15.317     High High
cufflinks 0.688       Low
cufflinks 14.359     High High
cufflinks 1.066       Low
cufflinks 2.598        
cufflinks 12.825     High High
cufflinks 1.889        

0 Strain