Gene : Seita.9G455700 S. italica v2.2
Defline:  (1 of 1) PTHR23205 - SPLICING FACTOR 3A SUBUNIT 2 Genomic Order:  4557
Name:  ? Seita.9G455700 Secondary Identifier:  ? PAC:32686962
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G455700 0.5kb upstream 0.5kb upstream 3562 true scaffold_9: 50311139-50314700 Setaria italica
Seita.9G455700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50314201-50314700 Setaria italica
Seita.9G455700 0.5kb downstream 0.5kb downstream 3562 true scaffold_9: 50310639-50314200 Setaria italica
Seita.9G455700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50310639-50311138 Setaria italica
Seita.9G455700 1.0kb upstream 1.0kb upstream 4062 true scaffold_9: 50311139-50315200 Setaria italica
Seita.9G455700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50314201-50315200 Setaria italica
Seita.9G455700 1.0kb downstream 1.0kb downstream 4062 true scaffold_9: 50310139-50314200 Setaria italica
Seita.9G455700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50310139-50311138 Setaria italica
Seita.9G455700 2.0kb upstream 2.0kb upstream 5062 true scaffold_9: 50311139-50316200 Setaria italica
Seita.9G455700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50314201-50316200 Setaria italica
Seita.9G455700 2.0kb downstream 2.0kb downstream 5062 true scaffold_9: 50309139-50314200 Setaria italica
Seita.9G455700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50309139-50311138 Setaria italica
Seita.9G455700 5.0kb upstream 5.0kb upstream 8062 true scaffold_9: 50311139-50319200 Setaria italica
Seita.9G455700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50314201-50319200 Setaria italica
Seita.9G455700 5.0kb downstream 5.0kb downstream 8062 true scaffold_9: 50306139-50314200 Setaria italica
Seita.9G455700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50306139-50311138 Setaria italica
Seita.9G455700 10.0kb upstream 10.0kb upstream 13062 true scaffold_9: 50311139-50324200 Setaria italica
Seita.9G455700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50314201-50324200 Setaria italica
Seita.9G455700 10.0kb downstream 10.0kb downstream 13062 true scaffold_9: 50301139-50314200 Setaria italica
Seita.9G455700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50301139-50311138 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181159 5267 Panicoideae View MSA
124586979 5269 Grass View MSA
122043873 5273 Angiosperm View MSA
121344235 5274 Embryophyte View MSA
123425065 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.983     High  
cufflinks 14.332     High  
cufflinks 11.517     High  
cufflinks 11.097     High Low
cufflinks 10.421       Low
cufflinks 16.37     High  
cufflinks 11.44        
cufflinks 15.364     High  
cufflinks 10.861       Low
cufflinks 23.261     High High
cufflinks 13.198        
cufflinks 14.208     High  
cufflinks 13.148        
cufflinks 12.825        
cufflinks 16.256     High  
cufflinks 11.323        
cufflinks 18.652     High High
cufflinks 12.648     High  
cufflinks 12.232     High  
cufflinks 16.205     High  

0 Strain