Gene : Seita.9G456200 S. italica v2.2
Defline:  (1 of 1) PTHR12560:SF12 - LAG1 LONGEVITY ASSURANCE HOMOLOG 2 Genomic Order:  4562
Name:  ? Seita.9G456200 Secondary Identifier:  ? PAC:32693434
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G456200 0.5kb upstream 0.5kb upstream 5018 true scaffold_9: 50334551-50339568 Setaria italica
Seita.9G456200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50339069-50339568 Setaria italica
Seita.9G456200 0.5kb downstream 0.5kb downstream 5018 true scaffold_9: 50334051-50339068 Setaria italica
Seita.9G456200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50334051-50334550 Setaria italica
Seita.9G456200 1.0kb upstream 1.0kb upstream 5518 true scaffold_9: 50334551-50340068 Setaria italica
Seita.9G456200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50339069-50340068 Setaria italica
Seita.9G456200 1.0kb downstream 1.0kb downstream 5518 true scaffold_9: 50333551-50339068 Setaria italica
Seita.9G456200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50333551-50334550 Setaria italica
Seita.9G456200 2.0kb upstream 2.0kb upstream 6518 true scaffold_9: 50334551-50341068 Setaria italica
Seita.9G456200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50339069-50341068 Setaria italica
Seita.9G456200 2.0kb downstream 2.0kb downstream 6518 true scaffold_9: 50332551-50339068 Setaria italica
Seita.9G456200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50332551-50334550 Setaria italica
Seita.9G456200 5.0kb upstream 5.0kb upstream 9518 true scaffold_9: 50334551-50344068 Setaria italica
Seita.9G456200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50339069-50344068 Setaria italica
Seita.9G456200 5.0kb downstream 5.0kb downstream 9518 true scaffold_9: 50329551-50339068 Setaria italica
Seita.9G456200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50329551-50334550 Setaria italica
Seita.9G456200 10.0kb upstream 10.0kb upstream 14518 true scaffold_9: 50334551-50349068 Setaria italica
Seita.9G456200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50339069-50349068 Setaria italica
Seita.9G456200 10.0kb downstream 10.0kb downstream 14518 true scaffold_9: 50324551-50339068 Setaria italica
Seita.9G456200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50324551-50334550 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190709 5267 Panicoideae View MSA
124588693 5269 Grass View MSA
122045142 5273 Angiosperm View MSA
121349401 5274 Embryophyte View MSA
123428118 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.398       High
cufflinks 6.505        
cufflinks 3.017       Low
cufflinks 3.421       Low
cufflinks 3.323       Low
cufflinks 5.989        
cufflinks 5.418        
cufflinks 5.886        
cufflinks 5.952        
cufflinks 5.517        
cufflinks 5.257        
cufflinks 7.257       High
cufflinks 4.779        
cufflinks 5.361        
cufflinks 6.363        
cufflinks 5.279        
cufflinks 6.46        
cufflinks 5.792        
cufflinks 4.583        
cufflinks 8.474       High

0 Strain