Gene : Seita.9G454700 S. italica v2.2
Defline:  (1 of 1) PTHR23086//PTHR23086:SF40 - PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE Genomic Order:  4547
Name:  ? Seita.9G454700 Secondary Identifier:  ? PAC:32689725
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6351 Setaria italica pathologic  
Sitalica PWY-6352 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G454700 0.5kb upstream 0.5kb upstream 4931 true scaffold_9: 50221685-50226615 Setaria italica
Seita.9G454700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50221685-50222184 Setaria italica
Seita.9G454700 0.5kb downstream 0.5kb downstream 4931 true scaffold_9: 50222185-50227115 Setaria italica
Seita.9G454700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50226616-50227115 Setaria italica
Seita.9G454700 1.0kb upstream 1.0kb upstream 5431 true scaffold_9: 50221185-50226615 Setaria italica
Seita.9G454700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50221185-50222184 Setaria italica
Seita.9G454700 1.0kb downstream 1.0kb downstream 5431 true scaffold_9: 50222185-50227615 Setaria italica
Seita.9G454700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50226616-50227615 Setaria italica
Seita.9G454700 2.0kb upstream 2.0kb upstream 6431 true scaffold_9: 50220185-50226615 Setaria italica
Seita.9G454700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50220185-50222184 Setaria italica
Seita.9G454700 2.0kb downstream 2.0kb downstream 6431 true scaffold_9: 50222185-50228615 Setaria italica
Seita.9G454700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50226616-50228615 Setaria italica
Seita.9G454700 5.0kb upstream 5.0kb upstream 9431 true scaffold_9: 50217185-50226615 Setaria italica
Seita.9G454700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50217185-50222184 Setaria italica
Seita.9G454700 5.0kb downstream 5.0kb downstream 9431 true scaffold_9: 50222185-50231615 Setaria italica
Seita.9G454700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50226616-50231615 Setaria italica
Seita.9G454700 10.0kb upstream 10.0kb upstream 14431 true scaffold_9: 50212185-50226615 Setaria italica
Seita.9G454700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50212185-50222184 Setaria italica
Seita.9G454700 10.0kb downstream 10.0kb downstream 14431 true scaffold_9: 50222185-50236615 Setaria italica
Seita.9G454700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50226616-50236615 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027967 5273 Angiosperm View MSA
122175513 5267 Panicoideae View MSA
124588367 5269 Grass View MSA
121349579 5274 Embryophyte View MSA
123428114 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.835        
cufflinks 0.612        
cufflinks 0.02     Low Low
cufflinks 0.041     Low Low
cufflinks 0.034     Low Low
cufflinks 0.865        
cufflinks 0.563        
cufflinks 0.998        
cufflinks 0.516        
cufflinks 0.699        
cufflinks 0.857        
cufflinks 0.338        
cufflinks 0.502        
cufflinks 0.036     Low Low
cufflinks 0.863        
cufflinks 0.269        
cufflinks 0.492        
cufflinks 0.106        
cufflinks 0.016     Low Low
cufflinks 0.595        

0 Strain