Gene : Seita.9G457300 S. italica v2.2
Defline:  (1 of 3) PTHR24006:SF428 - CORONATINE-INSENSITIVE PROTEIN 1 Genomic Order:  4573
Name:  ? Seita.9G457300 Secondary Identifier:  ? PAC:32693569
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G457300 0.5kb upstream 0.5kb upstream 3579 true scaffold_9: 50407472-50411050 Setaria italica
Seita.9G457300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50407472-50407971 Setaria italica
Seita.9G457300 0.5kb downstream 0.5kb downstream 3579 true scaffold_9: 50407972-50411550 Setaria italica
Seita.9G457300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50411051-50411550 Setaria italica
Seita.9G457300 1.0kb upstream 1.0kb upstream 4079 true scaffold_9: 50406972-50411050 Setaria italica
Seita.9G457300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50406972-50407971 Setaria italica
Seita.9G457300 1.0kb downstream 1.0kb downstream 4079 true scaffold_9: 50407972-50412050 Setaria italica
Seita.9G457300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50411051-50412050 Setaria italica
Seita.9G457300 2.0kb upstream 2.0kb upstream 5079 true scaffold_9: 50405972-50411050 Setaria italica
Seita.9G457300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50405972-50407971 Setaria italica
Seita.9G457300 2.0kb downstream 2.0kb downstream 5079 true scaffold_9: 50407972-50413050 Setaria italica
Seita.9G457300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50411051-50413050 Setaria italica
Seita.9G457300 5.0kb upstream 5.0kb upstream 8079 true scaffold_9: 50402972-50411050 Setaria italica
Seita.9G457300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50402972-50407971 Setaria italica
Seita.9G457300 5.0kb downstream 5.0kb downstream 8079 true scaffold_9: 50407972-50416050 Setaria italica
Seita.9G457300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50411051-50416050 Setaria italica
Seita.9G457300 10.0kb upstream 10.0kb upstream 13079 true scaffold_9: 50397972-50411050 Setaria italica
Seita.9G457300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50397972-50407971 Setaria italica
Seita.9G457300 10.0kb downstream 10.0kb downstream 13079 true scaffold_9: 50407972-50421050 Setaria italica
Seita.9G457300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50411051-50421050 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191342 5267 Panicoideae View MSA
124589460 5269 Grass View MSA
122042626 5273 Angiosperm View MSA
121349676 5274 Embryophyte View MSA
123381396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.638     High High
cufflinks 23.611     High  
cufflinks 16.822     High Low
cufflinks 18.639     High  
cufflinks 20.339     High  
cufflinks 28.347     High  
cufflinks 22.89     High  
cufflinks 16.889     High Low
cufflinks 22.234     High  
cufflinks 25.154     High  
cufflinks 29.334     High  
cufflinks 31.499     High High
cufflinks 23.162     High  
cufflinks 14.474     High Low
cufflinks 23.698     High  
cufflinks 26.359     High  
cufflinks 26.257     High  
cufflinks 42.498     High High
cufflinks 17.937     High Low
cufflinks 22.826     High  

0 Strain