Gene : Seita.9G462800 S. italica v2.2
Defline:  (1 of 1) PTHR13677:SF0 - PROTEIN F53H1.3, ISOFORM A Genomic Order:  4628
Name:  ? Seita.9G462800 Secondary Identifier:  ? PAC:32688909
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G462800 0.5kb upstream 0.5kb upstream 4400 true scaffold_9: 50798721-50803120 Setaria italica
Seita.9G462800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50798721-50799220 Setaria italica
Seita.9G462800 0.5kb downstream 0.5kb downstream 4400 true scaffold_9: 50799221-50803620 Setaria italica
Seita.9G462800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50803121-50803620 Setaria italica
Seita.9G462800 1.0kb upstream 1.0kb upstream 4900 true scaffold_9: 50798221-50803120 Setaria italica
Seita.9G462800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50798221-50799220 Setaria italica
Seita.9G462800 1.0kb downstream 1.0kb downstream 4900 true scaffold_9: 50799221-50804120 Setaria italica
Seita.9G462800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50803121-50804120 Setaria italica
Seita.9G462800 2.0kb upstream 2.0kb upstream 5900 true scaffold_9: 50797221-50803120 Setaria italica
Seita.9G462800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50797221-50799220 Setaria italica
Seita.9G462800 2.0kb downstream 2.0kb downstream 5900 true scaffold_9: 50799221-50805120 Setaria italica
Seita.9G462800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50803121-50805120 Setaria italica
Seita.9G462800 5.0kb upstream 5.0kb upstream 8900 true scaffold_9: 50794221-50803120 Setaria italica
Seita.9G462800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50794221-50799220 Setaria italica
Seita.9G462800 5.0kb downstream 5.0kb downstream 8900 true scaffold_9: 50799221-50808120 Setaria italica
Seita.9G462800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50803121-50808120 Setaria italica
Seita.9G462800 10.0kb upstream 10.0kb upstream 13900 true scaffold_9: 50789221-50803120 Setaria italica
Seita.9G462800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50789221-50799220 Setaria italica
Seita.9G462800 10.0kb downstream 10.0kb downstream 13900 true scaffold_9: 50799221-50813120 Setaria italica
Seita.9G462800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50803121-50813120 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184948 5267 Panicoideae View MSA
124573474 5269 Grass View MSA
122046522 5273 Angiosperm View MSA
121346566 5274 Embryophyte View MSA
123427841 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.324        
cufflinks 6.39        
cufflinks 5.642        
cufflinks 5.2       Low
cufflinks 6.483        
cufflinks 7.122        
cufflinks 6.63        
cufflinks 7.546        
cufflinks 5.488       Low
cufflinks 16.578     High High
cufflinks 10.908        
cufflinks 9.659        
cufflinks 16.257     High High
cufflinks 6.533        
cufflinks 13.066       High
cufflinks 5.779        
cufflinks 11.793       High
cufflinks 5.852        
cufflinks 5.802        
cufflinks 11.787       High

0 Strain