Gene : Seita.9G463000 S. italica v2.2
Defline:  (1 of 1) PTHR11102:SF84 - HCP-like superfamily protein-related Genomic Order:  4630
Name:  ? Seita.9G463000 Secondary Identifier:  ? PAC:32691760
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G463000 0.5kb upstream 0.5kb upstream 9142 true scaffold_9: 50820111-50829252 Setaria italica
Seita.9G463000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50828753-50829252 Setaria italica
Seita.9G463000 0.5kb downstream 0.5kb downstream 9142 true scaffold_9: 50819611-50828752 Setaria italica
Seita.9G463000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50819611-50820110 Setaria italica
Seita.9G463000 1.0kb upstream 1.0kb upstream 9642 true scaffold_9: 50820111-50829752 Setaria italica
Seita.9G463000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50828753-50829752 Setaria italica
Seita.9G463000 1.0kb downstream 1.0kb downstream 9642 true scaffold_9: 50819111-50828752 Setaria italica
Seita.9G463000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50819111-50820110 Setaria italica
Seita.9G463000 2.0kb upstream 2.0kb upstream 10642 true scaffold_9: 50820111-50830752 Setaria italica
Seita.9G463000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50828753-50830752 Setaria italica
Seita.9G463000 2.0kb downstream 2.0kb downstream 10642 true scaffold_9: 50818111-50828752 Setaria italica
Seita.9G463000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50818111-50820110 Setaria italica
Seita.9G463000 5.0kb upstream 5.0kb upstream 13642 true scaffold_9: 50820111-50833752 Setaria italica
Seita.9G463000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50828753-50833752 Setaria italica
Seita.9G463000 5.0kb downstream 5.0kb downstream 13642 true scaffold_9: 50815111-50828752 Setaria italica
Seita.9G463000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50815111-50820110 Setaria italica
Seita.9G463000 10.0kb upstream 10.0kb upstream 18642 true scaffold_9: 50820111-50838752 Setaria italica
Seita.9G463000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50828753-50838752 Setaria italica
Seita.9G463000 10.0kb downstream 10.0kb downstream 18642 true scaffold_9: 50810111-50828752 Setaria italica
Seita.9G463000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50810111-50820110 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181251 5267 Panicoideae View MSA
124585999 5269 Grass View MSA
122044163 5273 Angiosperm View MSA
123428907 5275 Viridiplantae View MSA
121346808 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.736        
cufflinks 7.706        
cufflinks 7.483        
cufflinks 5.958        
cufflinks 5.705       Low
cufflinks 6.975        
cufflinks 6.454        
cufflinks 5.685       Low
cufflinks 5.182       Low
cufflinks 6.384        
cufflinks 8.295        
cufflinks 8.177        
cufflinks 6.753        
cufflinks 6.728        
cufflinks 10.503       High
cufflinks 5.279       Low
cufflinks 8.089        
cufflinks 6.903        
cufflinks 6.716        
cufflinks 8.837       High

0 Strain