Gene : Seita.9G466000 S. italica v2.2
Defline:  (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  4660
Name:  ? Seita.9G466000 Secondary Identifier:  ? PAC:32691408
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARO-PWY Setaria italica pathologic  
Sitalica PWY-6163 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G466000 0.5kb upstream 0.5kb upstream 4754 true scaffold_9: 50993995-50998748 Setaria italica
Seita.9G466000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50993995-50994494 Setaria italica
Seita.9G466000 0.5kb downstream 0.5kb downstream 4754 true scaffold_9: 50994495-50999248 Setaria italica
Seita.9G466000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50998749-50999248 Setaria italica
Seita.9G466000 1.0kb upstream 1.0kb upstream 5254 true scaffold_9: 50993495-50998748 Setaria italica
Seita.9G466000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50993495-50994494 Setaria italica
Seita.9G466000 1.0kb downstream 1.0kb downstream 5254 true scaffold_9: 50994495-50999748 Setaria italica
Seita.9G466000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50998749-50999748 Setaria italica
Seita.9G466000 2.0kb upstream 2.0kb upstream 6254 true scaffold_9: 50992495-50998748 Setaria italica
Seita.9G466000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50992495-50994494 Setaria italica
Seita.9G466000 2.0kb downstream 2.0kb downstream 6254 true scaffold_9: 50994495-51000748 Setaria italica
Seita.9G466000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50998749-51000748 Setaria italica
Seita.9G466000 5.0kb upstream 5.0kb upstream 9254 true scaffold_9: 50989495-50998748 Setaria italica
Seita.9G466000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50989495-50994494 Setaria italica
Seita.9G466000 5.0kb downstream 5.0kb downstream 9254 true scaffold_9: 50994495-51003748 Setaria italica
Seita.9G466000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50998749-51003748 Setaria italica
Seita.9G466000 10.0kb upstream 10.0kb upstream 14254 true scaffold_9: 50984495-50998748 Setaria italica
Seita.9G466000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50984495-50994494 Setaria italica
Seita.9G466000 10.0kb downstream 10.0kb downstream 14254 true scaffold_9: 50994495-51008748 Setaria italica
Seita.9G466000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50998749-51008748 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
122196469 5267 Panicoideae View MSA
124574152 5269 Grass View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.922     High  
cufflinks 29.736     High  
cufflinks 20.566     High Low
cufflinks 19.197     High Low
cufflinks 20.67     High Low
cufflinks 33.281     High  
cufflinks 24.175     High  
cufflinks 36.798     High  
cufflinks 41.855     High  
cufflinks 27.675     High  
cufflinks 37.145     High  
cufflinks 52.489     High High
cufflinks 43.055     High  
cufflinks 24.788     High  
cufflinks 45.883     High High
cufflinks 18.47     High Low
cufflinks 48.986     High High
cufflinks 17.489     High Low
cufflinks 26.698     High  
cufflinks 51.659     High High

0 Strain