Gene : Seita.9G464600 S. italica v2.2
Defline:  (1 of 1) PTHR21235:SF2 - IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF Genomic Order:  4646
Name:  ? Seita.9G464600 Secondary Identifier:  ? PAC:32688248
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G464600 0.5kb upstream 0.5kb upstream 6387 true scaffold_9: 50910535-50916921 Setaria italica
Seita.9G464600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 50910535-50911034 Setaria italica
Seita.9G464600 0.5kb downstream 0.5kb downstream 6387 true scaffold_9: 50911035-50917421 Setaria italica
Seita.9G464600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 50916922-50917421 Setaria italica
Seita.9G464600 1.0kb upstream 1.0kb upstream 6887 true scaffold_9: 50910035-50916921 Setaria italica
Seita.9G464600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 50910035-50911034 Setaria italica
Seita.9G464600 1.0kb downstream 1.0kb downstream 6887 true scaffold_9: 50911035-50917921 Setaria italica
Seita.9G464600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 50916922-50917921 Setaria italica
Seita.9G464600 2.0kb upstream 2.0kb upstream 7887 true scaffold_9: 50909035-50916921 Setaria italica
Seita.9G464600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 50909035-50911034 Setaria italica
Seita.9G464600 2.0kb downstream 2.0kb downstream 7887 true scaffold_9: 50911035-50918921 Setaria italica
Seita.9G464600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 50916922-50918921 Setaria italica
Seita.9G464600 5.0kb upstream 5.0kb upstream 10887 true scaffold_9: 50906035-50916921 Setaria italica
Seita.9G464600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 50906035-50911034 Setaria italica
Seita.9G464600 5.0kb downstream 5.0kb downstream 10887 true scaffold_9: 50911035-50921921 Setaria italica
Seita.9G464600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 50916922-50921921 Setaria italica
Seita.9G464600 10.0kb upstream 10.0kb upstream 15887 true scaffold_9: 50901035-50916921 Setaria italica
Seita.9G464600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 50901035-50911034 Setaria italica
Seita.9G464600 10.0kb downstream 10.0kb downstream 15887 true scaffold_9: 50911035-50926921 Setaria italica
Seita.9G464600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 50916922-50926921 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178658 5267 Panicoideae View MSA
124584061 5269 Grass View MSA
122046043 5273 Angiosperm View MSA
121347063 5274 Embryophyte View MSA
123424776 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.698        
cufflinks 4.978        
cufflinks 1.262       Low
cufflinks 1.025       Low
cufflinks 2.856        
cufflinks 4.801        
cufflinks 5.522        
cufflinks 6.886        
cufflinks 8.076       High
cufflinks 5.479        
cufflinks 6.155        
cufflinks 4.394        
cufflinks 4.352        
cufflinks 2.543        
cufflinks 4.908        
cufflinks 3.701        
cufflinks 6.425        
cufflinks 3.472        
cufflinks 1.187       Low
cufflinks 5.562        

0 Strain